Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT21_RS38230 Genome accession   NZ_CP108054
Coordinates   8458532..8459194 (+) Length   220 a.a.
NCBI ID   WP_328772833.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00286     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8453532..8464194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vraR 8458532..8459194 (+) 663 - - Regulator

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23465.08 Da        Isoelectric Point: 4.8207

>NTDB_id=652225 OHT21_RS38230 WP_328772833.1 8458532..8459194(+) (vraR) [Streptomyces sp. NBC_00286]
MTVRVVLADDQPLVRSGLRVLLADHPDLEVVGEAATGAEAVQLVRDVSPDVAVMDIRMPGMDGIEATRLITAGPATTRVL
VLTTFDEDDHVYGALRAGASGFMVKDMALDDILAAIRVVAAGDALIAPSVTRRLIADFVGRPAAVPEPSPRPVEGITERE
REVLTLVGRGRSNTEIAEDLFITVATAKSHVSRLLTKLGARDRVQLVITAYETGLVTLPR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=652225 OHT21_RS38230 WP_328772833.1 8458532..8459194(+) (vraR) [Streptomyces sp. NBC_00286]
ATGACCGTCCGGGTCGTGCTCGCCGACGACCAGCCGCTGGTGCGGTCCGGTCTGCGCGTGCTCCTGGCCGACCACCCCGA
CCTGGAGGTCGTCGGTGAGGCCGCCACCGGGGCCGAGGCGGTCCAACTGGTCAGGGATGTCAGCCCCGACGTTGCGGTGA
TGGACATCCGGATGCCCGGCATGGACGGCATCGAGGCCACTCGCCTGATCACGGCCGGTCCGGCGACGACCCGCGTCCTC
GTCCTGACCACCTTCGACGAGGACGACCACGTCTACGGCGCGCTCCGGGCAGGCGCAAGCGGCTTCATGGTCAAGGACAT
GGCGCTGGACGACATCCTCGCGGCCATCCGCGTGGTCGCCGCCGGCGACGCACTGATCGCACCGAGTGTGACGCGCCGTC
TGATCGCGGACTTCGTCGGGCGCCCCGCGGCCGTCCCGGAGCCCTCCCCACGGCCGGTCGAGGGCATCACCGAGCGGGAA
CGGGAAGTCCTGACCCTGGTCGGACGCGGCCGGTCGAACACCGAGATCGCGGAGGATCTCTTCATCACGGTGGCCACCGC
CAAGTCGCACGTGTCCCGACTCCTCACCAAACTGGGCGCCCGAGACCGGGTCCAACTCGTGATCACCGCCTATGAGACGG
GGCTCGTCACACTGCCTCGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.889

98.182

0.382
  degU Bacillus subtilis subsp. subtilis str. 168

36.889

100

0.377