Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT21_RS36915 Genome accession   NZ_CP108054
Coordinates   8154372..8155013 (+) Length   213 a.a.
NCBI ID   WP_328772616.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00286     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8149372..8160013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vraR 8154372..8155013 (+) 642 - - Regulator

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23075.32 Da        Isoelectric Point: 4.8754

>NTDB_id=652223 OHT21_RS36915 WP_328772616.1 8154372..8155013(+) (vraR) [Streptomyces sp. NBC_00286]
MADAIKVLLVDDHQVVRRGLRTFLEIQDDIEVVGEASDGEEGVARAEELKPDIVLMDVKMPGMDGVAALRRLRELDNPAR
VLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAEALLSQEDSNFGQGRGGSLTEREQEVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGVTG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=652223 OHT21_RS36915 WP_328772616.1 8154372..8155013(+) (vraR) [Streptomyces sp. NBC_00286]
GTGGCTGACGCAATCAAGGTGCTGCTCGTCGACGACCACCAAGTGGTACGCCGCGGACTGCGCACCTTCCTGGAGATACA
GGACGACATCGAGGTCGTGGGAGAGGCGTCCGACGGCGAAGAAGGAGTGGCCCGGGCCGAGGAGTTGAAGCCCGACATCG
TCCTCATGGACGTCAAGATGCCCGGCATGGACGGCGTCGCCGCCCTGCGCAGGCTGCGCGAACTCGACAACCCCGCGCGC
GTGCTCATCGTCACCAGCTTCACCGAGCAGCGCACGGTCGTTCCGGCCCTGCGCGCGGGCGCCGCCGGATATGTCTACAA
GGACGTGGACCCCGACGCCCTGGCCGGAGCCATCCGCTCCGTCCATGCGGGACACATCCTTCTGCAACCCGAGGTGGCCG
AGGCGCTGCTGTCCCAGGAGGACTCCAACTTCGGCCAGGGGAGAGGCGGTTCACTCACCGAGCGGGAGCAGGAGGTACTC
GGCCTGATCGCCGACGGCCGCTCCAACCGCGAGATAGCCCGCGCCCTCGTCCTCTCCGAGAAGACGGTCAAGACACACGT
CTCGAACATCTTGATGAAGCTCGACCTCGCCGACCGCACCCAGGCCGCCCTGTGGGCCGTACGCCATGGGGTGACCGGCT
GA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.972

99.061

0.455
  degU Bacillus subtilis subsp. subtilis str. 168

38.009

100

0.394