Detailed information NTG0652206

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OHT21_RS31215
• Genome accession: NZ_CP108054
• Coordinates: 6860180..6861466 (+)
• Length: 428 a.a.
• NCBI ID: WP_328771605.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00286
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 6855180..6866466

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
-	clpX	6860180..6861466 (+)	1287	-	-	Regulator

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46918.63 Da
• Isoelectric Point: 4.6966

>NTDB_id=652206 OHT21_RS31215 WP_328771605.1 6860180..6861466(+) (clpX) [Streptomyces sp. NBC_00286]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQES
AKKALSVAVYNHYKRVQAGENGGSQNRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKRELEEKDQFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQSVMYEVPSRKDVGRVVIT
ADVVLSNVNPTLIPRDARGRGSGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=652206 OHT21_RS31215 WP_328771605.1 6860180..6861466(+) (clpX) [Streptomyces sp. NBC_00286]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGTGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGCCCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAAGAGCTCGCCGAAACGA
GCGAGGTGAGGTGGGAGGAACTCCCCAAACCTCGCGAGATCTACGAGTTCCTCGAGGGGTACGTCGTCGGGCAGGAGTCG
GCGAAGAAGGCTCTCTCCGTAGCGGTGTACAACCACTACAAGCGGGTCCAGGCCGGTGAGAACGGCGGGAGCCAGAACCG
CGACGACGCCATCGAGCTGGCGAAGTCCAACATCCTGCTCCTCGGCCCCACGGGCTCCGGAAAGACCCTGCTCGCCCAGA
CTCTGGCGCGCATGCTGAATGTCCCCTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCGGGATATGTCGGCGAGGAC
GTAGAGAACATCCTGCTGAAGCTCATCCAGGCCGCGGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTGGCCCGCAAGAGCGAGAACCCGTCGATCACGCGGGACGTGAGCGGCGAGGGCGTCCAGCAGGCGC
TGCTCAAGATCCTGGAGGGCACGACGGCCTCGGTCCCGCCGCAGGGCGGCCGCAAGCATCCCCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGCGCCTTCGCCGGCCTGGAGAAGATCATCGAGTCCCGCGCGGGCGC
GAAGGGCATCGGCTTCGGCGCGACGATCCGCTCGAAGCGCGAGCTGGAGGAGAAGGACCAGTTCGAGGACGTCATGCCCG
AGGACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGTCGCCTCCCTGTGATCACTTCGGTCCACAACCTCGACCGC
GAGGCGCTCCTCCAGATCCTGGTCGAGCCGCGCAACGCGCTGGTGAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
AGAGCTGGACTTCGAGCGCGAGGCCCTCGAAGCCATCGCGGATCAGGCCATCTTGAGGCAGACCGGCGCCCGCGGCTTGC
GCGCCATCATGGAAGAGGTCCTGCAGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTAGGCCGCGTCGTCATCACC
GCGGACGTCGTCCTCTCGAACGTGAACCCGACGCTCATTCCGCGTGATGCGCGGGGGCGGGGCTCGGGGGAGCAGAAGAC
GGCGTAG

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-394)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.687	93.925	0.589
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.745	96.028	0.526