Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT21_RS21325 Genome accession   NZ_CP108054
Coordinates   4685728..4686402 (-) Length   224 a.a.
NCBI ID   WP_328769957.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00286     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4680728..4691402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vraR 4685728..4686402 (-) 675 - - Regulator

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24126.89 Da        Isoelectric Point: 4.8321

>NTDB_id=652187 OHT21_RS21325 WP_328769957.1 4685728..4686402(-) (vraR) [Streptomyces sp. NBC_00286]
MKSGTIRVLIADDQQMVRQGFSVLLNTQPDIDVIGQAVDGLDAVAQVAELAPDVVLMDIRMPELGGIEATRRIVDKTPQI
KVLVLTTFDLDEYVYDALRAGASGFLLKDASADKLAEAVRVVAAGDALLAPGITRRLIARFSQLDGAPRAPLKERVGELT
ERETEVLALIAQGLSNAEIAERLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPAGY

Nucleotide


Download         Length: 675 bp        

>NTDB_id=652187 OHT21_RS21325 WP_328769957.1 4685728..4686402(-) (vraR) [Streptomyces sp. NBC_00286]
ATGAAGAGCGGCACCATCCGCGTACTCATCGCCGACGACCAGCAGATGGTCCGGCAGGGCTTCTCGGTGCTGCTCAACAC
CCAGCCCGACATCGATGTGATCGGCCAGGCGGTCGACGGCCTGGACGCGGTCGCCCAGGTCGCCGAACTCGCCCCGGATG
TCGTCCTGATGGACATCCGCATGCCGGAACTCGGCGGCATCGAGGCCACTCGCCGCATCGTCGACAAGACACCGCAGATC
AAGGTGCTGGTGCTGACCACGTTCGATCTCGACGAGTACGTGTATGACGCGCTGCGCGCGGGTGCCTCCGGGTTTCTGCT
GAAGGACGCGTCCGCCGACAAGCTGGCGGAGGCGGTCAGGGTGGTCGCCGCGGGGGACGCACTGCTCGCGCCCGGGATCA
CGAGGCGGCTGATCGCCCGGTTCTCCCAGCTCGACGGGGCTCCCCGCGCCCCTCTCAAGGAGCGCGTCGGTGAGCTGACC
GAGCGCGAGACGGAGGTCCTCGCCCTGATCGCGCAGGGTCTGTCGAACGCCGAGATCGCCGAGCGGCTGGTGGTCGCCGA
GCAGACGGTGAAGACCCATGTGGGCCGGATCCTGGTGAAGTTGGGGCTGCGGGACCGGACGCAGGCGGCGGTGTTCGCGT
ACGAGTCGGGTCTGGTACGGCCCGCCGGGTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-120)

Bacterial regulatory proteins, luxR family (GerE)

(159-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.37

96.429

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

42.152

99.554

0.42