Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT21_RS21315 Genome accession   NZ_CP108054
Coordinates   4683588..4684256 (-) Length   222 a.a.
NCBI ID   WP_328769955.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00286     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4678588..4689256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vraR 4683588..4684256 (-) 669 - - Regulator

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23689.34 Da        Isoelectric Point: 4.6426

>NTDB_id=652186 OHT21_RS21315 WP_328769955.1 4683588..4684256(-) (vraR) [Streptomyces sp. NBC_00286]
MTIRVLIADDQMMVREGFSVLLGAMPDIEVVGEAVNGRDAVDRVRELAPDVVLMDIRMPELNGIEATREIVAADGGAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTRRLITEFSKLAEAPSLSATARAAAYGDLT
ERETEVLVLIAQGLSNGEIAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=652186 OHT21_RS21315 WP_328769955.1 4683588..4684256(-) (vraR) [Streptomyces sp. NBC_00286]
ATGACGATCCGGGTGCTGATCGCTGACGACCAGATGATGGTCCGCGAAGGGTTCTCCGTGCTGCTCGGCGCGATGCCGGA
CATCGAGGTTGTCGGCGAGGCGGTCAACGGGCGGGACGCGGTGGACCGAGTGCGGGAACTCGCACCCGACGTGGTCCTGA
TGGACATCCGTATGCCCGAGCTCAACGGCATCGAGGCGACCCGGGAGATAGTCGCCGCGGACGGCGGGGCCAAGGTGCTG
GTGCTGACCACGTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGCGCAGGGGCGTCGGGCTTCCTCCTGAAGGATGC
CTCGGCACGCCAACTCGCGGACGGGGTAAGGGTGGTGGCGGCCGGCGAGGCCCTGCTCGCGCCCTCTGTCACCAGACGGT
TGATCACGGAGTTCTCGAAGTTGGCGGAGGCGCCGAGCCTGTCGGCCACGGCGCGGGCGGCGGCGTACGGCGATCTGACC
GAGCGGGAGACGGAGGTGCTGGTACTCATCGCGCAGGGCCTGTCCAACGGTGAGATAGCCGGGCGTCTCGTGGTCGCCGA
GTCGACGATCAAGACCCATGTGAGCCGGATCCTGGTGAAGCTGGGCCTGCGGGACCGGACCCAGGCGGCGGTGTTCGCAT
ACGAGGCGAGGTTGGTCACTCCGGGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(159-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.292

98.649

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

42.202

98.198

0.414