Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHT21_RS21185 Genome accession   NZ_CP108054
Coordinates   4661376..4661975 (-) Length   199 a.a.
NCBI ID   WP_165339967.1    Uniprot ID   A0ABX0DNA8
Organism   Streptomyces sp. NBC_00286     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4656376..4666975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - recR 4661376..4661975 (-) 600 - - Machinery gene

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21764.17 Da        Isoelectric Point: 4.9909

>NTDB_id=652185 OHT21_RS21185 WP_165339967.1 4661376..4661975(-) (recR) [Streptomyces sp. NBC_00286]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALLEVKAKVRFCATCGNVAQEELCNICRDTRRDLAV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=652185 OHT21_RS21185 WP_165339967.1 4661376..4661975(-) (recR) [Streptomyces sp. NBC_00286]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGGCGGCTCCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCGACGGACGTACGGCGTCTCGCGCAGGCCCTTCTCGAAGTGAAGGCCAAGGTCC
GCTTCTGCGCCACCTGCGGGAACGTCGCGCAGGAGGAGCTGTGCAACATCTGCCGCGATACGCGCCGCGACCTCGCGGTC
ATCTGCGTGGTGGAGGAGCCGAAGGATGTCGTGGCGATCGAGCGGACGCGGGAGTTCCGGGGCAAGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTGCGGATAAGGGAACTCCTGGCCCGGCTCGCGGACGGCA
CGGTCACGGAGCTGATCCTGGCCACGGATCCGAACCTGGAGGGCGAGGCGACGGCCACGTATCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGTCTGCCCGTCGGCGGTGACCTCGAGTACGCCGATGAGGTCACCCT
GGGCCGGGCCTTCGAAGGGAGGCGGTTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457