Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GQR96_RS08590 Genome accession   NZ_CP091527
Coordinates   1851457..1852053 (+) Length   198 a.a.
NCBI ID   WP_048323585.1    Uniprot ID   -
Organism   Klebsiella sp. PCX     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1846457..1857053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQR96_RS08565 (GQR96_08565) - 1846573..1848330 (-) 1758 WP_065904898.1 Lon protease family protein -
  GQR96_RS08570 (GQR96_08570) matP 1848516..1848968 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  GQR96_RS08575 (GQR96_08575) ompA 1849176..1850246 (-) 1071 WP_044521956.1 porin OmpA -
  GQR96_RS08580 (GQR96_08580) sulA 1850599..1851108 (-) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  GQR96_RS08585 (GQR96_08585) - 1851134..1851439 (+) 306 WP_158238036.1 hypothetical protein -
  GQR96_RS08590 (GQR96_08590) sxy/tfoX 1851457..1852053 (+) 597 WP_048323585.1 TfoX/Sxy family DNA transformation protein Regulator
  GQR96_RS08595 (GQR96_08595) yccS 1852064..1854199 (-) 2136 WP_065904896.1 YccS family putative transporter -
  GQR96_RS08600 (GQR96_08600) - 1854217..1854663 (-) 447 WP_004201437.1 YccF domain-containing protein -
  GQR96_RS08605 (GQR96_08605) helD 1854788..1856842 (+) 2055 WP_065904894.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22579.34 Da        Isoelectric Point: 10.2936

>NTDB_id=652174 GQR96_RS08590 WP_048323585.1 1851457..1852053(+) (sxy/tfoX) [Klebsiella sp. PCX]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSARLKDLPNISFHMELQLIHSGIPDVLALRQVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=652174 GQR96_RS08590 WP_048323585.1 1851457..1852053(+) (sxy/tfoX) [Klebsiella sp. PCX]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGCACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGCAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5