Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT21_RS09230 Genome accession   NZ_CP108054
Coordinates   2035971..2036618 (-) Length   215 a.a.
NCBI ID   WP_328774016.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00286     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2030971..2041618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vraR 2035971..2036618 (-) 648 - - Regulator

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23245.82 Da        Isoelectric Point: 6.0294

>NTDB_id=652152 OHT21_RS09230 WP_328774016.1 2035971..2036618(-) (vraR) [Streptomyces sp. NBC_00286]
MRVLIVDDHAVVRRGIRAYLEVLDDMEVAAEAADGQEALTRLDAMAAHRELPDVVLIDLLMPRMDGATTIGVIKNRHPEV
RVVVLTSFGEMERVHAALAQGAAGYLLKDAEAGEVVAAIRAAARGEVFLDPEVARGLTQEIVSPPTGLAALTGRERDVLV
LVAEGRSNQQIADELVISERTARTHVSNVLRKLRLTSRTQAALFAVRQGLVPPRA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=652152 OHT21_RS09230 WP_328774016.1 2035971..2036618(-) (vraR) [Streptomyces sp. NBC_00286]
ATCCGGGTCCTGATCGTCGACGATCATGCTGTTGTACGCCGCGGAATCCGCGCGTATCTCGAGGTTCTGGACGATATGGA
GGTGGCCGCGGAGGCCGCCGACGGGCAGGAGGCGCTCACCCGGCTCGACGCGATGGCCGCGCACCGGGAACTGCCGGACG
TGGTGCTGATCGACCTGCTCATGCCGAGGATGGACGGGGCGACGACGATCGGAGTGATCAAGAACCGTCATCCCGAGGTA
CGGGTCGTGGTGCTCACCAGCTTCGGCGAGATGGAACGCGTCCACGCGGCCCTCGCGCAGGGCGCCGCGGGCTACCTGCT
CAAGGACGCGGAGGCGGGCGAGGTGGTCGCCGCGATCCGTGCCGCCGCACGGGGCGAGGTCTTCCTCGATCCCGAGGTGG
CCAGGGGACTCACCCAGGAGATCGTCTCCCCGCCGACCGGGCTCGCCGCGCTCACCGGCCGCGAACGCGACGTCCTCGTC
CTGGTCGCCGAGGGCCGCTCGAACCAGCAGATCGCCGACGAGCTGGTCATCAGCGAACGCACCGCCCGCACCCACGTCAG
CAACGTCCTGCGCAAACTCCGGCTCACGTCACGGACGCAGGCCGCCCTGTTCGCCGTACGGCAGGGGCTGGTACCGCCGC
GGGCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-119)

Bacterial regulatory proteins, luxR family (GerE)

(150-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.758

98.14

0.4
  degU Bacillus subtilis subsp. subtilis str. 168

34.632

100

0.372