Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT21_RS06635 Genome accession   NZ_CP108054
Coordinates   1442418..1443086 (-) Length   222 a.a.
NCBI ID   WP_328767311.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00286     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1437418..1448086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vraR 1442418..1443086 (-) 669 - - Regulator

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24300.86 Da        Isoelectric Point: 4.5811

>NTDB_id=652148 OHT21_RS06635 WP_328767311.1 1442418..1443086(-) (vraR) [Streptomyces sp. NBC_00286]
MIKVLLADDQRLVRAGFRSILEDEDDITVVGEASDGEEAVAACRELRPDVALMDIRMPGVDGLEASRRIADDPRLSDVRV
VILTTFDLDDYIYGALRAGATGFLVKDTEPEELLRAVRVAARGDALISPSVTRRLIAEFAGRVKVPELSPRLNALTQRER
EVMELVAAGLTNDEIAARLVLSPATAKTHVSRIMSKLDARDRSQLVVMAYESGMVSPGWLSE

Nucleotide


Download         Length: 669 bp        

>NTDB_id=652148 OHT21_RS06635 WP_328767311.1 1442418..1443086(-) (vraR) [Streptomyces sp. NBC_00286]
ATGATCAAGGTTCTGCTGGCGGACGACCAGCGCCTGGTGCGCGCCGGGTTCCGCTCCATCCTGGAGGACGAGGACGACAT
CACCGTGGTCGGAGAGGCGAGCGACGGCGAAGAGGCCGTGGCCGCCTGCCGGGAACTGCGGCCCGACGTCGCCCTGATGG
ACATCCGCATGCCGGGCGTGGACGGTCTCGAGGCCTCCCGCCGCATCGCCGACGATCCGCGTCTGTCCGACGTGCGGGTG
GTCATCCTGACCACCTTCGACCTGGACGACTACATCTACGGAGCGCTGCGGGCGGGTGCCACCGGCTTTCTGGTGAAGGA
CACCGAACCGGAGGAGCTGTTGCGGGCGGTACGGGTGGCGGCACGCGGCGATGCGCTGATCAGCCCCTCGGTCACACGCC
GGCTGATCGCGGAGTTCGCGGGCCGGGTCAAGGTGCCCGAGCTGAGCCCGCGCCTGAACGCGCTGACGCAGCGGGAGCGC
GAGGTGATGGAGTTGGTGGCGGCCGGACTGACCAACGACGAGATCGCCGCGCGGCTGGTGTTGAGCCCTGCCACCGCCAA
GACCCATGTCAGCCGCATCATGTCCAAGCTGGACGCCCGCGATCGCTCCCAGCTGGTGGTCATGGCGTACGAGTCGGGAA
TGGTGAGCCCCGGCTGGTTGTCGGAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.07

96.847

0.378
  degU Bacillus subtilis subsp. subtilis str. 168

36

100

0.365