Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT21_RS04215 Genome accession   NZ_CP108054
Coordinates   888391..889068 (+) Length   225 a.a.
NCBI ID   WP_328766849.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00286     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 883391..894068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vraR 888391..889068 (+) 678 - - Regulator

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24787.47 Da        Isoelectric Point: 5.9572

>NTDB_id=652146 OHT21_RS04215 WP_328766849.1 888391..889068(+) (vraR) [Streptomyces sp. NBC_00286]
MSIRVVVADDQALVRRGFAMILRVHHDIEVVAEAGTGLEAVEATRRHRPDVILMDIRMPEMDGLEATSRILQEADWGPRV
LILTTFDPDEYVYEALRSGASAFVLKDIPPEQLATAVRTVAEGGTLLAPSITRRFIDRFTQRRTVNTTVAARLERLTVRE
REIMTAVARGASNAEIADQLVIGPATVKSHVSSILTKLGLRDRIQIVICAYESGLIEAGDHDVGH

Nucleotide


Download         Length: 678 bp        

>NTDB_id=652146 OHT21_RS04215 WP_328766849.1 888391..889068(+) (vraR) [Streptomyces sp. NBC_00286]
GTGAGCATCCGCGTCGTCGTGGCCGACGACCAGGCGCTGGTACGGCGCGGCTTCGCCATGATTCTCCGCGTCCACCACGA
CATCGAGGTCGTGGCCGAGGCGGGCACCGGCCTCGAGGCCGTCGAGGCAACACGGCGGCACCGACCGGACGTGATCCTCA
TGGACATCCGCATGCCCGAGATGGACGGCCTCGAGGCGACCTCCCGGATCCTTCAGGAAGCCGACTGGGGTCCCCGGGTA
CTGATCCTGACCACGTTCGACCCGGACGAGTACGTCTACGAGGCGCTGCGCTCCGGCGCCAGTGCCTTCGTACTGAAGGA
CATTCCCCCGGAGCAACTGGCCACCGCCGTACGCACCGTGGCCGAGGGCGGGACGCTGCTGGCCCCCTCGATCACCCGGC
GCTTCATCGACCGGTTCACACAGCGCCGTACGGTCAACACCACCGTCGCGGCCCGCCTGGAACGGCTCACCGTCCGCGAA
CGCGAGATCATGACCGCCGTCGCCCGAGGCGCGAGCAACGCGGAAATCGCCGACCAGCTCGTCATCGGCCCCGCCACCGT
CAAATCACATGTGTCGAGCATCCTCACCAAGCTCGGGCTGCGCGACCGCATCCAGATCGTGATCTGCGCCTACGAAAGCG
GCCTCATCGAAGCGGGCGACCACGACGTCGGGCACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.092

96.444

0.387
  degU Bacillus subtilis subsp. subtilis str. 168

37.719

100

0.382