Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT21_RS01470 Genome accession   NZ_CP108054
Coordinates   295618..296283 (-) Length   221 a.a.
NCBI ID   WP_328766286.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00286     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 290618..301283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vraR 295618..296283 (-) 666 - - Regulator

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24145.89 Da        Isoelectric Point: 4.7333

>NTDB_id=652144 OHT21_RS01470 WP_328766286.1 295618..296283(-) (vraR) [Streptomyces sp. NBC_00286]
MIRVLLADDQSLVRAGFKALLDAQKDIEVAGEAADGEEALRKVRELRPDVVLMDIRMPLLDGLEATRRITEDGGLQDIKV
VMLTTFELDEYVFEAIRSGASGFLVKDTEPDELLRAVRAVVDGDALLSPGVTRRLIAEFAARSKEPAAAQSLAELTERER
EVMALVGIGLSNDEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=652144 OHT21_RS01470 WP_328766286.1 295618..296283(-) (vraR) [Streptomyces sp. NBC_00286]
GTGATCCGCGTACTGCTCGCCGACGACCAGTCACTGGTCCGCGCAGGCTTCAAGGCGCTCCTCGACGCACAGAAGGACAT
CGAGGTGGCCGGCGAAGCAGCCGACGGCGAGGAGGCGCTGCGCAAGGTGCGTGAACTGCGCCCCGACGTCGTCCTGATGG
ACATCCGTATGCCCCTGCTCGACGGTCTCGAAGCGACCCGCCGCATCACGGAGGACGGCGGGCTGCAGGACATCAAGGTG
GTCATGCTCACCACCTTCGAGCTCGACGAGTACGTCTTCGAAGCCATCCGTTCCGGGGCCTCCGGCTTCCTCGTCAAGGA
CACCGAACCGGACGAACTCCTGCGCGCGGTCAGGGCGGTGGTCGACGGCGACGCGCTGCTGTCGCCCGGCGTGACGCGGC
GGCTGATCGCCGAGTTCGCGGCCCGGTCCAAGGAGCCCGCTGCCGCTCAGTCGCTCGCCGAACTCACCGAGCGGGAGCGG
GAGGTGATGGCCCTGGTGGGCATCGGGCTGTCCAACGACGAGATCGCCCGCCGACTGGTCGTCAGCCCGCTCACGGCGAA
GACCCATGTGAGCCGCACGATGGTGAAGCTGGGCGCCCGCGACCGGGCCCAACTGGTCGTACTGGCCTACGAGTCGGGCT
TGGTGCGGCCGGGCTGGCTGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.535

97.285

0.385
  degU Bacillus subtilis subsp. subtilis str. 168

37.333

100

0.38