Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   OHT76_RS35670 Genome accession   NZ_CP108053
Coordinates   7865610..7867685 (-) Length   691 a.a.
NCBI ID   WP_328874985.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00287     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7860610..7872685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT76_RS35655 (OHT76_35685) opcA 7861997..7862932 (-) 936 WP_328874982.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  OHT76_RS35660 (OHT76_35690) zwf 7862929..7864458 (-) 1530 WP_328874983.1 glucose-6-phosphate dehydrogenase -
  OHT76_RS35665 (OHT76_35695) tal 7864455..7865579 (-) 1125 WP_328874984.1 transaldolase -
  OHT76_RS35670 (OHT76_35700) recP/tkt 7865610..7867685 (-) 2076 WP_328874985.1 transketolase Machinery gene
  OHT76_RS35675 (OHT76_35705) - 7867821..7868711 (+) 891 WP_328874986.1 AraC family transcriptional regulator -
  OHT76_RS35680 (OHT76_35710) - 7868708..7869238 (-) 531 WP_328874987.1 hypothetical protein -
  OHT76_RS35685 (OHT76_35715) - 7869322..7870695 (-) 1374 WP_328874988.1 glycoside hydrolase family 16 protein -
  OHT76_RS35690 (OHT76_35720) - 7870846..7872072 (-) 1227 WP_328874989.1 Ig-like domain-containing protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 74370.86 Da        Isoelectric Point: 4.7721

>NTDB_id=652137 OHT76_RS35670 WP_328874985.1 7865610..7867685(-) (recP/tkt) [Streptomyces sp. NBC_00287]
MSTQTPDSFEWTELDRRAVDTARLLAADAVQKVGNGHPGTAMSLAPAAYTIFQKVMRHDPADPEWTGRDRFVLSPGHTSL
TLYTQLFLAGYEVELDDLKAFRTQGSKTPGHPEYGHTAGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAAEGESPFD
HTIWAIVSDGDLEEGVSAEASSLAGHQKLGNLVFVYDDNHISIEGDTATAFSEDVLKRYEAYGWHTQRIEPTGDGDVDVH
ALYAALKAAQDETERPSIIAMRTIIAWPAPTAQNTEASHGSALGEDEIAATKRVLGFDPARTFEVADEVLAHSRRALDRG
AEAHAAWDKRIAEWRTANPERAKLFDRVVAGQLPEGWESAVPVFEPGKSVATRAASGKVLQALGAVLPELWGGSADLAGS
NNTTIDKTSSFLPKGNPLPEADPYGRTVHFGIREFSMAAEMNGIALHGNTRIYGGTFLVFSDYMRNAVRMSALMQLPVTY
VWTHDSVGLGEDGPTHQPVEHLASLRAIPGLNIVRPADANETAVAWEEILRRHASDPAPHGLALTRQGVPTYERNEDAAK
GGYVLRDSSTGTPDVVIVATGSEVQLAVAAREQLEAEGIGARVVSMPSVEWFEQQPREYRDAVIPPSVRARVAVEAGIGL
TWYRFVGDAGRIVSLEHFGASADAQTLFAEYGFTAENVAAAARESLAAARG

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=652137 OHT76_RS35670 WP_328874985.1 7865610..7867685(-) (recP/tkt) [Streptomyces sp. NBC_00287]
ATGAGCACGCAGACACCGGACAGCTTCGAATGGACCGAACTCGACCGGCGTGCCGTCGACACCGCGCGCCTGCTGGCGGC
GGATGCCGTGCAGAAGGTCGGCAACGGCCACCCCGGCACCGCGATGAGCCTCGCGCCTGCCGCGTACACGATCTTTCAGA
AGGTGATGCGGCACGATCCCGCGGATCCCGAGTGGACCGGCCGTGACCGCTTCGTCCTCTCCCCCGGCCACACCTCGCTG
ACGCTCTACACCCAGCTCTTCCTCGCCGGGTACGAGGTCGAGCTGGACGACCTCAAGGCCTTCCGCACCCAGGGTTCGAA
GACGCCCGGTCACCCGGAGTACGGCCACACCGCGGGCGTGGAGACCACGACCGGGCCGCTCGGTCAGGGCGTCGCGAACG
CCGTAGGCATGGCGATGGCCGCCCGCTACGAGCGCGGGCTGTTCGACCCCGAGGCCGCCGAGGGCGAGTCCCCGTTCGAC
CACACCATCTGGGCGATCGTCTCCGACGGCGACCTGGAGGAGGGCGTCTCCGCCGAGGCCTCCTCGCTGGCCGGCCATCA
GAAGCTGGGCAACCTGGTCTTCGTCTACGACGACAACCACATCTCCATCGAGGGCGACACCGCGACCGCGTTCTCCGAGG
ACGTGCTGAAGCGGTACGAGGCCTACGGCTGGCACACCCAGCGCATCGAGCCCACCGGGGACGGCGACGTCGACGTCCAC
GCCCTGTACGCGGCGCTCAAGGCCGCGCAGGACGAGACCGAGCGCCCCTCGATCATCGCGATGCGCACGATCATCGCCTG
GCCCGCCCCGACCGCGCAGAACACCGAGGCCTCGCACGGCTCCGCGCTCGGCGAGGACGAGATCGCGGCCACCAAGCGCG
TCCTCGGCTTCGACCCCGCGCGCACCTTCGAGGTCGCCGACGAGGTCCTCGCCCACAGCCGCCGCGCCCTCGACCGGGGC
GCCGAGGCGCACGCCGCCTGGGACAAGCGCATCGCCGAGTGGCGCACCGCGAACCCGGAGCGCGCCAAGCTGTTCGACCG
CGTGGTCGCCGGTCAGCTTCCCGAGGGCTGGGAGTCCGCGGTCCCGGTGTTCGAGCCCGGCAAGTCCGTCGCCACCCGCG
CCGCCTCCGGCAAGGTCCTCCAGGCACTCGGCGCGGTCCTGCCCGAGCTGTGGGGCGGCTCCGCCGACCTGGCCGGATCC
AACAACACCACGATCGACAAGACCAGCTCCTTCCTGCCGAAGGGCAACCCGCTGCCGGAGGCCGACCCCTACGGCCGTAC
CGTCCACTTCGGCATCCGCGAGTTCTCCATGGCCGCGGAGATGAACGGCATCGCCCTGCACGGCAACACACGCATCTACG
GCGGCACCTTCCTGGTGTTCTCCGACTACATGCGCAACGCCGTCCGGATGTCCGCGCTGATGCAGCTCCCCGTCACCTAT
GTGTGGACGCACGACTCCGTCGGCCTCGGTGAGGACGGACCCACCCACCAGCCGGTCGAGCACCTCGCCTCGCTGCGCGC
CATCCCGGGCCTGAACATCGTGCGGCCCGCCGACGCCAACGAGACCGCCGTCGCCTGGGAGGAGATCCTGCGCCGGCACG
CCTCCGACCCGGCCCCGCACGGCCTCGCGCTGACCCGCCAGGGCGTGCCGACGTACGAGCGCAACGAGGACGCGGCCAAG
GGCGGTTACGTCCTGCGCGACTCCTCGACCGGGACGCCGGACGTCGTGATCGTCGCTACCGGCTCCGAGGTCCAGCTCGC
CGTCGCCGCGCGCGAGCAGCTCGAAGCCGAGGGGATCGGCGCCCGGGTGGTGTCGATGCCGTCCGTGGAGTGGTTCGAGC
AGCAGCCGCGCGAGTACCGGGACGCCGTCATTCCGCCGTCCGTGCGAGCGCGCGTCGCTGTCGAAGCCGGGATCGGTCTG
ACGTGGTACCGGTTCGTGGGTGACGCAGGACGCATCGTCTCCCTCGAACACTTCGGCGCCTCCGCCGACGCCCAGACCCT
GTTCGCCGAGTACGGCTTCACCGCCGAGAACGTCGCCGCGGCCGCGCGGGAATCGCTCGCTGCCGCGCGTGGTTGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(572-678)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(15-354)

Transketolase, pyrimidine binding domain (Transket_pyr)

(369-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

46.244

98.263

0.454