Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHT76_RS33995 Genome accession   NZ_CP108053
Coordinates   7495223..7496245 (+) Length   340 a.a.
NCBI ID   WP_328874684.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00287     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7490223..7501245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT76_RS33980 (OHT76_34010) - 7490960..7491790 (-) 831 WP_328874681.1 helix-turn-helix transcriptional regulator -
  OHT76_RS33985 (OHT76_34015) - 7491905..7493572 (+) 1668 WP_328874682.1 AMP-binding protein -
  OHT76_RS33990 (OHT76_34020) - 7493569..7495158 (+) 1590 WP_328874683.1 AMP-binding protein -
  OHT76_RS33995 (OHT76_34025) cytR 7495223..7496245 (+) 1023 WP_328874684.1 LacI family DNA-binding transcriptional regulator Regulator
  OHT76_RS34000 (OHT76_34030) - 7496510..7497640 (+) 1131 WP_328874685.1 cellulose binding domain-containing protein -
  OHT76_RS34005 (OHT76_34035) - 7497762..7498856 (+) 1095 WP_328874686.1 lytic polysaccharide monooxygenase -
  OHT76_RS34010 (OHT76_34040) - 7498916..7499614 (-) 699 WP_328874687.1 hypothetical protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36915.08 Da        Isoelectric Point: 5.7827

>NTDB_id=652134 OHT76_RS33995 WP_328874684.1 7495223..7496245(+) (cytR) [Streptomyces sp. NBC_00287]
MGRMRPGSPTLEEVAALAGVGRGTVSRVINNAAGVKDSTRRAVERAIAELGYVPNLAARSLAGRRADAVALAMTERDWRL
FGEPFFSEIVRSVGDALADTSVQLLLTLVRTDAERRRFVEYARGGRVDGVLLMSVRAEDKLPDMLAEAGLPTVLLGRRSG
DEHVTYVDADNVGGARGAVEHLLRGGRRRIAAVTGPLDMYVTQCRLRGYQEALADAGLDPLPSLVVEGDFTEDSGRRATA
QLLERHPDMDAVFAASDTMAAGALGVLRAAGRRVPEDVAVIGFDDFTLAQHTEPSLTTVRQPLEEIGRTMVRLLLEEMEQ
PEVAWRHVILRTRLVVRDSA

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=652134 OHT76_RS33995 WP_328874684.1 7495223..7496245(+) (cytR) [Streptomyces sp. NBC_00287]
ATGGGCAGGATGCGCCCTGGCTCGCCGACGCTGGAGGAAGTCGCGGCCCTCGCCGGTGTCGGGCGTGGCACCGTCTCGCG
GGTCATCAACAACGCGGCGGGCGTGAAGGATTCGACGCGCCGTGCCGTTGAGCGGGCCATCGCCGAACTGGGCTATGTGC
CCAATCTGGCCGCCCGCTCCCTGGCCGGGCGGCGCGCGGACGCCGTGGCGCTGGCGATGACGGAGCGGGACTGGCGGCTG
TTCGGGGAGCCGTTCTTCTCGGAGATCGTTCGGTCGGTCGGCGACGCCCTCGCCGACACCTCGGTGCAACTGCTGCTCAC
CCTGGTCCGCACGGACGCCGAGCGGCGGCGCTTCGTCGAGTACGCGCGCGGCGGGCGGGTGGACGGGGTGCTGCTGATGT
CCGTGCGGGCCGAGGACAAGCTGCCCGACATGCTGGCCGAGGCCGGGCTGCCCACCGTGCTGCTCGGCCGTCGCTCGGGC
GACGAGCACGTCACCTACGTGGACGCAGACAACGTCGGCGGCGCCCGGGGCGCGGTCGAGCATCTGCTGCGCGGTGGGCG
CAGGAGGATCGCCGCGGTCACAGGTCCGCTCGACATGTACGTCACCCAGTGCCGACTGCGCGGCTACCAGGAGGCGCTCG
CCGACGCGGGCCTAGATCCGCTGCCCTCGCTGGTCGTCGAGGGGGACTTCACCGAGGACAGCGGGCGTCGGGCGACGGCC
CAACTCCTCGAACGGCACCCGGACATGGACGCCGTCTTCGCCGCCTCGGACACCATGGCCGCCGGAGCGCTGGGCGTGCT
GCGGGCCGCCGGACGCCGGGTGCCCGAGGACGTCGCGGTGATCGGCTTCGACGACTTCACGCTCGCCCAGCACACCGAAC
CCTCGCTGACGACGGTCCGTCAGCCGTTGGAGGAGATCGGGCGGACCATGGTGCGGCTGCTGCTCGAGGAGATGGAGCAG
CCCGAGGTGGCCTGGCGGCACGTCATCCTGCGCACGCGGCTGGTGGTCCGCGACTCGGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(10-55)

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.826

98.235

0.362