Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHT76_RS31490 Genome accession   NZ_CP108053
Coordinates   6887619..6888398 (-) Length   259 a.a.
NCBI ID   WP_015657416.1    Uniprot ID   K4R2X3
Organism   Streptomyces sp. NBC_00287     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6882619..6893398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT76_RS31480 (OHT76_31510) - 6884286..6885095 (+) 810 WP_328874225.1 GNAT family N-acetyltransferase -
  OHT76_RS31485 (OHT76_31515) - 6885482..6887470 (+) 1989 WP_328874226.1 ATP-dependent DNA helicase -
  OHT76_RS31490 (OHT76_31520) dinR/lexA 6887619..6888398 (-) 780 WP_015657416.1 transcriptional repressor LexA Regulator
  OHT76_RS31495 (OHT76_31525) nrdR 6888976..6889533 (+) 558 WP_328874227.1 transcriptional regulator NrdR -
  OHT76_RS31500 (OHT76_31530) - 6889701..6892595 (+) 2895 WP_328874228.1 vitamin B12-dependent ribonucleotide reductase -
  OHT76_RS31505 (OHT76_31535) - 6892663..6893196 (-) 534 WP_328874229.1 TerD family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28001.73 Da        Isoelectric Point: 7.0666

>NTDB_id=652128 OHT76_RS31490 WP_015657416.1 6887619..6888398(-) (dinR/lexA) [Streptomyces sp. NBC_00287]
MTTTADSATITAQDRPQGRLEPVHAMNEAANPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=652128 OHT76_RS31490 WP_015657416.1 6887619..6888398(-) (dinR/lexA) [Streptomyces sp. NBC_00287]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGACCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCGCGAACCCCGAGGGACACAAGCGCTCCCTGCCGGGCCGACCTCCAGGCATCCGGGCGGACAGCTCCGGACTCA
CCGACCGGCAACGCCGGGTCATCGAGGTCATCAGGGACTCCGTGCAGCGGCGCGGCTACCCGCCGTCGATGCGCGAGATC
GGCCAGGCCGTCGGCCTTTCCAGCACTTCCTCGGTCGCACACCAGCTCATGGCACTGGAGCGCAAGGGCTTCCTGCGGCG
CGACCCGCACCGCCCGCGCGCATACGAGGTGCGCGGTTCCGACCAGGCCGCCTCCGTGCAGCCCACGGACACCGCCGGCA
AGCCTGCCGCGTCGTACGTCCCGCTGGTCGGCCGGATCGCCGCCGGTGGTCCGATCCTCGCGGAGGAGTCCGTCGAGGAC
GTCTTCCCTCTCCCCCGGCAACTGGTCGGAGACGGTGAACTGTTCGTCCTGAAGGTCGTCGGTGACTCGATGATCGAGGC
CGCGATCTGTGACGGCGACTGGGTCACGGTCCGGCGCCAGCCCGTCGCCGAGAACGGCGACATCGTCGCCGCGATGCTCG
ACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTCCCGCACAACTCCGCGTACGAGCCG
ATCCCCGGCGACGACGCGACCATCCTCGGCAAGGTGGTGGCGGTGCTGCGGCGCGTGTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K4R2X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375