Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT76_RS14760 Genome accession   NZ_CP108053
Coordinates   3239153..3239815 (-) Length   220 a.a.
NCBI ID   WP_328871282.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00287     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3234153..3244815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT76_RS14740 (OHT76_14765) - 3234371..3235384 (+) 1014 WP_328871278.1 ABC transporter ATP-binding protein -
  OHT76_RS14745 (OHT76_14770) - 3235381..3236307 (+) 927 WP_328871279.1 dihydrodipicolinate synthase family protein -
  OHT76_RS14750 (OHT76_14775) - 3236421..3237908 (+) 1488 WP_328871280.1 FG-GAP and VCBS repeat-containing protein -
  OHT76_RS14755 (OHT76_14780) - 3237932..3239116 (-) 1185 WP_328871281.1 sialidase family protein -
  OHT76_RS14760 (OHT76_14785) vraR 3239153..3239815 (-) 663 WP_328871282.1 response regulator transcription factor Regulator
  OHT76_RS14765 (OHT76_14790) - 3239812..3241038 (-) 1227 WP_328871283.1 sensor histidine kinase -
  OHT76_RS14770 (OHT76_14795) - 3241209..3243296 (-) 2088 WP_328871284.1 MMPL family transporter -
  OHT76_RS14775 (OHT76_14800) - 3243435..3244130 (-) 696 WP_328871285.1 TerB family tellurite resistance protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23308.88 Da        Isoelectric Point: 4.6351

>NTDB_id=652082 OHT76_RS14760 WP_328871282.1 3239153..3239815(-) (vraR) [Streptomyces sp. NBC_00287]
MTIRVLLADDQTLVRAAFAMLVESAPDMEVVGQAGTGREALELARTERADLVVMDIRMPDLDGIEATRLIAADEDLAGVR
VLVLTTYDTDEHIVEALRAGASGFLVKDTRPAELLDAIRTVAAGEALLSPGPTARLIARFLRSPSTPAVGGPECLSERER
GVLTLVARGLNNTEIADALGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLVTPGTM

Nucleotide


Download         Length: 663 bp        

>NTDB_id=652082 OHT76_RS14760 WP_328871282.1 3239153..3239815(-) (vraR) [Streptomyces sp. NBC_00287]
GTGACCATCCGCGTCCTGCTCGCCGACGACCAGACCCTGGTCCGGGCCGCGTTCGCCATGCTCGTCGAGTCCGCGCCGGA
CATGGAGGTCGTGGGACAGGCCGGCACCGGCCGCGAGGCGCTGGAACTGGCCCGCACCGAACGCGCCGACCTCGTCGTGA
TGGACATCCGCATGCCCGACCTCGACGGCATCGAGGCCACCCGGCTGATCGCGGCCGACGAGGACCTCGCCGGGGTGCGG
GTACTGGTGCTGACGACGTACGACACCGACGAGCACATCGTGGAGGCGCTGCGGGCCGGGGCCTCCGGTTTCCTGGTGAA
GGACACCCGTCCGGCCGAACTCCTCGACGCCATCCGCACGGTCGCCGCCGGTGAGGCGCTGCTGTCACCGGGCCCCACGG
CACGGCTGATCGCGCGATTTCTGCGCAGCCCCTCAACCCCTGCCGTGGGCGGTCCCGAGTGCCTCTCCGAGCGGGAGCGC
GGGGTGCTCACGCTGGTCGCACGGGGGCTCAACAACACCGAGATCGCGGACGCGTTGGGGCTCAGCCCGCTCACGGCGAA
GACCCACGTCAGCCGCATCATGGGCAAGCTGGGGGCGCGCGACCGGGCACAGCTGGTCATCGTGGCGTACGAGTCGGGTC
TGGTGACTCCGGGAACCATGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-119)

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.209

97.727

0.364