Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHT76_RS14220 Genome accession   NZ_CP108053
Coordinates   3123673..3125601 (+) Length   642 a.a.
NCBI ID   WP_328871182.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00287     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3118673..3130601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT76_RS14205 (OHT76_14230) - 3120028..3120333 (+) 306 WP_328871179.1 YtxH domain-containing protein -
  OHT76_RS14210 (OHT76_14235) - 3120384..3121835 (+) 1452 WP_328871180.1 FGGY family carbohydrate kinase -
  OHT76_RS14215 (OHT76_14240) rcrP 3121940..3123673 (+) 1734 WP_328871181.1 ABC transporter ATP-binding protein Regulator
  OHT76_RS14220 (OHT76_14245) rcrQ 3123673..3125601 (+) 1929 WP_328871182.1 ABC transporter ATP-binding protein Regulator
  OHT76_RS14225 (OHT76_14250) - 3125638..3126945 (-) 1308 WP_328871183.1 RNA polymerase sigma factor -
  OHT76_RS14230 (OHT76_14255) dnaG 3127049..3128950 (-) 1902 WP_328871184.1 DNA primase -
  OHT76_RS14235 (OHT76_14260) - 3128989..3130254 (-) 1266 WP_328871185.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69629.97 Da        Isoelectric Point: 5.1252

>NTDB_id=652080 OHT76_RS14220 WP_328871182.1 3123673..3125601(+) (rcrQ) [Streptomyces sp. NBC_00287]
MAGPMGRMMAGTGPDHRSLDFKVSGRRLVAQFKPERLTIYVLLLCVVVSVGLSVVGPKILGKATDLVFAGIVGREMAPGE
TKEQVLQGMRDRGDGDMADMLRSTDFTPGEGIDFTAVGNVLLLALAVFTVAGLLMAVATRLVNRAVNRTMFRLREDVQSK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLAMMFWVSWILALVALVTVPLSFYIATRVGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHTLVKVFGRQDESAQQFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNINYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQSADPVPGVRPEELRGRVALE
GVSFRYDPEKPLIEDLSLTVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDVATMSRDELRSGIGMVLQDT
WLFGGTIAENIAYGASREVSRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGAGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHGELLAADGAYARLYKAQFAEAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=652080 OHT76_RS14220 WP_328871182.1 3123673..3125601(+) (rcrQ) [Streptomyces sp. NBC_00287]
ATGGCCGGGCCGATGGGGCGGATGATGGCCGGTACCGGGCCTGACCACCGCTCGCTGGACTTCAAGGTGTCGGGCCGGCG
GCTGGTCGCCCAGTTCAAGCCGGAGCGGCTCACCATCTATGTGCTGCTGCTGTGTGTCGTGGTCAGCGTGGGTCTGTCGG
TCGTCGGGCCGAAGATCCTCGGCAAGGCCACCGACCTCGTCTTCGCGGGCATCGTCGGACGGGAGATGGCGCCCGGGGAG
ACGAAGGAACAGGTCCTGCAGGGCATGCGGGACCGGGGCGACGGCGACATGGCCGACATGCTCCGCAGCACCGACTTCAC
GCCCGGCGAGGGCATCGACTTCACCGCCGTCGGGAATGTGCTGCTGCTCGCGCTCGCCGTGTTCACCGTCGCCGGGCTGC
TGATGGCGGTGGCGACGCGGCTGGTGAACCGGGCCGTGAACCGGACCATGTTCCGGCTGCGCGAGGACGTGCAGTCGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTCCTCTCCCGTGCCACGAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGGCAGCTCATCAACTCGGTGCTGACCATCATCGGTGTGCTCGCGATGATGT
TCTGGGTGTCGTGGATCCTGGCGCTCGTGGCGCTGGTGACCGTGCCGCTCTCCTTCTACATCGCCACCCGGGTCGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCGACCGGCAAGCTCAACGCCCACGTCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGGCGGCAGGACGAGTCGGCACAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACATCAACTATGTGCTGGTGGCG
GTGGTCGGCGGTCTGCGGGTCGCGTCGGGCTCCCTGTCCATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCCATGCCGCTCACGCAGGTCGCGTCCATGGCGAACCTGGTGCAGTCCGGGGTCGCCTCCGCCGAGCGGATCTTCGAAC
TCCTCGACGCGGAGGAGCAGTCGGCGGACCCCGTGCCCGGGGTGCGGCCCGAGGAGCTGCGCGGGCGGGTGGCGCTGGAG
GGTGTCTCCTTCCGGTACGACCCCGAGAAGCCGCTCATCGAGGACCTCTCGCTGACGGTGGAGCCCGGACAGACGGTCGC
GATCGTCGGCCCGACCGGCGCCGGGAAGACCACGCTGGTCAATCTCCTCATGCGGTTCTACGAGGTCTCCGGCGGGCGGA
TCACGCTGGACGGCGTGGACGTCGCGACGATGTCCCGGGACGAACTGCGCTCCGGGATAGGCATGGTGCTGCAGGACACC
TGGCTGTTCGGCGGGACGATCGCGGAGAACATCGCGTACGGGGCGTCTCGCGAGGTCTCCCGGGGCGAGATCGAGGAGGC
GGCGCGGGCGGCCCACGCGGACCGGTTCGTCCGTACGCTGCCGGACGGCTACGACACGGTGATCGACGACGAGGGTGCGG
GGGTCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGATCCGGTGATCCTGGTGCTGGACGAG
GCGACGTCGTCGGTCGACACGCGTACGGAGGTTCTGATCCAGAAGGCGATGGCGAAGCTCGCGCACGGGCGTACGTCGTT
CGTCATCGCGCATCGTCTGTCGACGATCCGGGACGCGGACACGATCCTGGTGATGGAGAACGGCTCCATCGTGGAACAGG
GCGCGCACGGCGAGCTGTTGGCGGCCGACGGGGCGTATGCGCGGCTGTACAAGGCGCAGTTCGCGGAGGCGGTCGCCGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.472

93.146

0.386