Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHT76_RS14215 Genome accession   NZ_CP108053
Coordinates   3121940..3123673 (+) Length   577 a.a.
NCBI ID   WP_328871181.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00287     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3116940..3128673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT76_RS14185 (OHT76_14210) - 3118047..3119330 (-) 1284 WP_328871178.1 MFS transporter -
  OHT76_RS14205 (OHT76_14230) - 3120028..3120333 (+) 306 WP_328871179.1 YtxH domain-containing protein -
  OHT76_RS14210 (OHT76_14235) - 3120384..3121835 (+) 1452 WP_328871180.1 FGGY family carbohydrate kinase -
  OHT76_RS14215 (OHT76_14240) rcrP 3121940..3123673 (+) 1734 WP_328871181.1 ABC transporter ATP-binding protein Regulator
  OHT76_RS14220 (OHT76_14245) rcrQ 3123673..3125601 (+) 1929 WP_328871182.1 ABC transporter ATP-binding protein Regulator
  OHT76_RS14225 (OHT76_14250) - 3125638..3126945 (-) 1308 WP_328871183.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62669.83 Da        Isoelectric Point: 5.9727

>NTDB_id=652079 OHT76_RS14215 WP_328871181.1 3121940..3123673(+) (rcrP) [Streptomyces sp. NBC_00287]
MLIRLLRTYLRPYRKPIALLVLLQFLQTCATLYLPTLNADIIDNGVVNGDTGYILSYGALMVGISLAQVVCNIGAVYYGA
RTAAALGRDVRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPVLGICVTLIVRRLRPLFRAMQERLDTVNRVLREQITGNRVIRAFIRDEYEGQRFRKANTELTDMSLGTGNLLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PVSPVRELRRHGHLEIRGAGFRYPGAEEPVLKGIDLVALPGETTAVIGSTGSGKSTLLGLVPRLFDATDGRVLVDGEDVA
TIDPRVLAKTVSLVPQKPYLFAGTVATNLRYGNPDATDEELLHALEVAQAKEFVDRLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSRETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=652079 OHT76_RS14215 WP_328871181.1 3121940..3123673(+) (rcrP) [Streptomyces sp. NBC_00287]
GTGCTCATACGACTCCTGCGGACCTACCTCAGGCCCTACCGAAAACCCATCGCCCTGCTGGTGCTGCTCCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACCCTCAACGCGGACATCATCGACAACGGTGTCGTCAACGGCGACACCGGCTACA
TCCTCAGTTACGGCGCCCTGATGGTCGGCATCTCGCTGGCGCAGGTCGTGTGCAACATCGGGGCCGTGTACTACGGCGCC
CGGACCGCCGCGGCGCTCGGCCGGGACGTGCGCGCCGCCGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGTGAGGTGGG
TCACTTCGGCGCGCCCTCGCTGATCACCCGCACCACCAATGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACATTCA
CGCTCATGGTCTCGGCGCCGATCATGTGCGTCGGCGGCATCGTGCTGGCCCTCGGCCTGGACGTGCCGCTGTCGGCGGTG
CTGGTCGCGGTGGTGCCGGTGCTGGGCATCTGCGTGACCTTGATCGTACGGCGGCTGCGGCCGCTGTTCCGGGCCATGCA
GGAGCGTCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGTGTGATCCGCGCCTTCATCCGCGACG
AGTACGAGGGGCAGCGCTTCCGGAAGGCGAACACCGAGCTCACCGATATGTCGCTGGGCACCGGAAACCTGCTCGCGCTG
ATGTTCCCGATCGTGATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGCATGCAGATCGGTGACCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGTGCCGAGCGGATCCAGGAGGTCCTGGACACGTCGTCGAGCGTGGTGCCA
CCGGTCTCCCCGGTGCGCGAGCTGCGCCGGCACGGGCATCTGGAGATCCGGGGCGCGGGCTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTCAAGGGCATCGACCTGGTGGCACTGCCCGGCGAGACCACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCGACCCTGCTGGGCCTGGTCCCCCGGCTGTTCGACGCGACCGACGGGCGGGTGCTCGTGGACGGGGAGGACGTGGCC
ACGATCGACCCCCGCGTGCTGGCCAAGACCGTCAGCCTGGTGCCGCAGAAGCCGTATCTGTTCGCCGGGACCGTGGCGAC
GAACCTTCGCTACGGCAATCCGGACGCCACCGACGAGGAGCTGTTGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TGGACCGGCTCGAAGGCGGGCTCGACGCGCCCATCGCGCAGGGCGGGACGAATGTCTCCGGCGGCCAGCGGCAGCGGCTC
GCCATCGCCCGGACCCTCGTGCAGCGCCCGGAGATCTATCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCCCTGCGCGCCGCGCTGTCCCGGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTGGTGCTCGACGAGGGCCGGGTCGTCGGCACCGGGCGGCACCATGAGCTGATGGCGGACAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.331

94.107

0.38