Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   LVJ85_RS11995 Genome accession   NZ_CP091522
Coordinates   2450896..2454126 (+) Length   1076 a.a.
NCBI ID   WP_244740015.1    Uniprot ID   -
Organism   Neisseria sp. Dent CA1/247     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2445896..2459126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ85_RS11975 (LVJ85_11975) tal 2446106..2447161 (+) 1056 WP_244740012.1 transaldolase -
  LVJ85_RS11980 (LVJ85_11980) - 2447635..2449437 (-) 1803 WP_244740013.1 bifunctional chorismate-binding protein/class IV aminotransferase -
  LVJ85_RS11985 (LVJ85_11985) ppk2 2449650..2450591 (+) 942 WP_244740014.1 polyphosphate kinase 2 -
  LVJ85_RS11990 (LVJ85_11990) - 2450667..2450828 (-) 162 WP_244743214.1 lipoprotein signal peptidase -
  LVJ85_RS11995 (LVJ85_11995) recC 2450896..2454126 (+) 3231 WP_244740015.1 exodeoxyribonuclease V subunit gamma Machinery gene
  LVJ85_RS12000 (LVJ85_12000) - 2454566..2455966 (+) 1401 WP_244740016.1 DEAD/DEAH box helicase -
  LVJ85_RS12005 (LVJ85_12005) nfsA 2456171..2456902 (-) 732 WP_244740017.1 oxygen-insensitive NADPH nitroreductase -
  LVJ85_RS12010 (LVJ85_12010) wrbA 2457050..2457658 (-) 609 WP_244740018.1 NAD(P)H:quinone oxidoreductase -
  LVJ85_RS12015 (LVJ85_12015) - 2457706..2458926 (+) 1221 WP_244740020.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 1076 a.a.        Molecular weight: 121774.52 Da        Isoelectric Point: 5.6629

>NTDB_id=652073 LVJ85_RS11995 WP_244740015.1 2450896..2454126(+) (recC) [Neisseria sp. Dent CA1/247]
MLYLYQSNRLEDLAALFTRVHSLQPPENPFEAEEIVVQSQGMRRYLNTYLARETGIAANLNFSLPAGLAWQLMRRFIPGI
PALSPFAPEVMRWRLLGLFQSRDFQTASEYLPAREALQSYLDSGSTAAYQLAGQLADIFDQYLVYRPQWIDAWQQGKSMG
LGSDENWQAVLWRFLNDGSQHTPHRVGLWRQLLDSLDPQHLPRRYCVFGIATMAPMYLQLLQALAEHCDVHIFALNPSSG
YWGNVIEAAQILRQEDDTDLSLSGHPLLASLGKQGRDFFDALTDVPKHEISVFDEEPFQTASPTLLRRLQYDIQTLSMPS
ENPHGLPQPDLNDGSIQAVSAHSPLRELQILKDRLLEVLAEHPDWQPHDIAVLTPHIEPYSPFIEAVFGQEQTGSHALPY
SVSDVKISRRQPLFQALAQALTLLESRFEVNLLLPLLENDLVLQRFELTRDDLPLLHDTIAALNVHWGTDEHMRGGRNNL
FTWQQGLERLALGWMLPESRHPLWKRISAWHGNPNHTAVLSRFSALVRTLTDTARLWAKPAPVAEWTERIRRLTSALAAT
DADGQYAWQQLSQALARWQEEAELADFGGDLPRQTVIRHIGRFLDSESQAGFLRGGITFCSMVPMRSLPFKMICLLGLND
GDFPRNTKAAAFDLIARHPQKGDRARRDDDRYLFLEAVMSARDILYLSYIGRDIRNDQPLAPSALLGELIDTLAAMTGRS
AQELHTHWVKQHPLQPFSHRYFTPESAGSDGLTSTRRDYAEALNRPPEPEAPFFTEPLDDAAADDDTVAHHSFIRFWKNP
VRTWLQHTLHWQKPYRDAAWEAAEPFEPQQSARITAEYTAARRHNEDFGRLESRLQAESLLPAGELGALWQNRFQTAAKS
LDHTLVTSPKLPPAPYTLTVGAYTLEGSLNHLYRHGQIYFPGQAFKAPEQLAVLLEHLIFCAVRPSETGQYQTHILLPEQ
PQTLAEIPQPEAVEALQNWLEYYQIGQTRPLPFFPRVNLDAAEEWLKSADQDKALAKARNTYHGGTHAAGQKSYPEVALV
FGGNEEDPTASTLFWNITADLLAPLIRLTTPPADND

Nucleotide


Download         Length: 3231 bp        

>NTDB_id=652073 LVJ85_RS11995 WP_244740015.1 2450896..2454126(+) (recC) [Neisseria sp. Dent CA1/247]
ATGCTTTATCTTTACCAGTCCAACCGCCTCGAAGACTTAGCCGCCCTCTTCACCCGCGTACACAGCCTGCAACCGCCCGA
AAACCCTTTCGAGGCGGAGGAAATCGTGGTGCAGAGCCAAGGGATGCGGCGTTATCTCAACACCTATCTGGCGCGTGAAA
CCGGCATTGCAGCCAACCTCAATTTCAGCCTGCCCGCCGGCTTGGCATGGCAGCTGATGCGGCGGTTTATCCCCGGCATT
CCCGCGCTCAGCCCGTTTGCCCCCGAAGTGATGCGCTGGCGGCTGCTCGGCCTGTTTCAAAGCCGGGATTTTCAGACGGC
CTCCGAATACCTGCCCGCACGCGAAGCCCTGCAAAGCTATCTCGACAGCGGCAGCACCGCCGCCTACCAGCTGGCCGGAC
AACTCGCCGACATTTTCGACCAATACCTCGTGTACCGCCCGCAATGGATAGACGCTTGGCAGCAAGGCAAAAGCATGGGC
TTGGGCAGCGACGAAAACTGGCAGGCCGTTTTGTGGCGTTTTCTCAACGACGGCTCGCAACACACGCCCCACCGCGTCGG
CTTGTGGCGGCAGCTGCTCGACTCGCTTGACCCGCAGCACCTGCCCCGCCGCTACTGCGTTTTCGGCATCGCCACCATGG
CGCCGATGTATCTGCAACTCTTGCAGGCGCTGGCCGAGCATTGCGACGTGCACATTTTCGCGCTCAACCCCAGCAGCGGC
TATTGGGGCAACGTGATTGAAGCGGCGCAAATCCTCCGGCAGGAAGACGACACCGATTTAAGCCTGTCCGGCCATCCCCT
GCTCGCCTCGCTGGGCAAACAGGGGCGCGACTTTTTCGACGCGCTCACCGACGTACCCAAACACGAAATTTCCGTATTCG
ACGAAGAACCTTTTCAGACGGCCTCACCCACGCTGCTGCGGCGTTTGCAATACGACATCCAAACCCTGTCGATGCCGTCT
GAAAACCCGCACGGCCTGCCCCAACCTGATTTAAACGACGGCTCGATACAGGCCGTATCCGCACACAGCCCCCTGCGCGA
ACTGCAAATCCTCAAAGACCGCCTGCTCGAAGTGCTGGCCGAACATCCCGACTGGCAGCCGCACGACATCGCCGTGCTCA
CCCCCCATATCGAGCCGTACAGCCCCTTTATCGAAGCCGTGTTCGGGCAAGAGCAAACCGGCAGCCACGCGCTGCCCTAT
TCCGTGTCGGACGTCAAAATCAGCCGCCGCCAGCCCCTGTTTCAAGCCCTCGCCCAAGCCCTCACGCTGCTCGAAAGCCG
TTTTGAAGTCAACCTTTTGCTGCCCCTGCTCGAAAACGACCTCGTGCTGCAACGCTTCGAGCTGACCCGCGACGACCTGC
CGCTGCTGCACGACACCATCGCCGCCCTCAACGTACACTGGGGCACCGACGAACACATGCGCGGCGGCCGCAACAACCTC
TTCACTTGGCAGCAAGGGCTGGAGCGGCTCGCCCTCGGCTGGATGCTGCCCGAAAGCCGCCATCCCTTATGGAAGCGCAT
CAGCGCATGGCACGGCAACCCCAACCACACCGCCGTACTCAGCCGCTTCAGCGCCCTCGTCCGCACCCTCACCGACACCG
CCCGCCTGTGGGCCAAACCCGCACCCGTAGCCGAATGGACGGAACGCATCCGCCGCCTCACTTCCGCCCTCGCCGCCACC
GACGCCGACGGCCAATACGCTTGGCAACAACTCAGCCAAGCCCTCGCCCGCTGGCAGGAAGAAGCCGAACTGGCCGACTT
CGGCGGCGACCTGCCCCGACAAACCGTTATCCGCCACATCGGCCGCTTCCTCGACAGCGAAAGCCAAGCCGGCTTCCTGC
GCGGCGGCATCACCTTTTGCAGCATGGTGCCGATGCGCAGCCTGCCCTTCAAAATGATCTGCCTGCTCGGCCTCAACGAC
GGCGATTTCCCCCGCAACACTAAAGCCGCCGCCTTCGACCTCATCGCCCGCCACCCGCAAAAAGGCGACCGCGCCCGCCG
CGACGACGACCGCTACCTGTTTCTCGAAGCCGTGATGAGCGCGCGCGACATCCTTTACCTTTCCTACATCGGCCGCGACA
TCCGCAACGACCAGCCCCTCGCCCCCTCCGCCCTGCTCGGCGAACTCATCGACACCCTCGCCGCCATGACCGGCCGTTCC
GCGCAAGAGCTGCACACCCATTGGGTGAAACAACACCCGCTGCAACCCTTTTCACACCGCTATTTCACCCCCGAAAGCGC
AGGTTCAGACGGCCTCACCAGCACCCGCCGCGACTACGCCGAAGCCCTCAACCGCCCGCCCGAACCCGAAGCTCCGTTCT
TCACCGAACCGCTCGACGATGCCGCCGCAGACGACGACACCGTTGCCCACCACAGCTTTATCCGCTTCTGGAAAAACCCC
GTACGCACTTGGCTGCAACACACCCTCCACTGGCAAAAGCCCTACCGCGACGCCGCATGGGAAGCCGCCGAACCCTTCGA
GCCGCAACAAAGCGCGCGCATCACCGCCGAATACACCGCCGCCCGCCGCCACAACGAAGACTTCGGCCGCCTCGAAAGCC
GACTGCAAGCCGAAAGCCTGCTGCCCGCGGGCGAATTGGGCGCACTGTGGCAAAACCGTTTCCAAACCGCCGCCAAATCG
CTCGACCACACCTTAGTCACCAGCCCCAAACTGCCGCCCGCACCCTACACCCTCACCGTCGGCGCGTACACCCTCGAAGG
CAGCCTCAACCACCTCTACCGCCACGGGCAGATTTACTTCCCCGGTCAAGCATTCAAAGCACCCGAACAGCTCGCCGTTT
TACTCGAACATCTGATTTTCTGCGCCGTGAGGCCGTCTGAAACCGGGCAATACCAAACCCATATCCTGCTGCCCGAACAG
CCGCAAACCCTCGCCGAGATTCCGCAACCAGAAGCCGTCGAAGCCCTGCAAAACTGGCTGGAGTATTACCAAATCGGCCA
AACCCGCCCGCTGCCGTTCTTCCCGCGCGTGAATTTAGACGCCGCCGAAGAATGGCTCAAATCGGCCGACCAAGACAAAG
CTCTGGCCAAAGCGCGCAACACTTACCACGGCGGCACGCACGCTGCCGGCCAAAAAAGCTATCCCGAAGTTGCACTGGTG
TTCGGCGGCAACGAAGAAGACCCCACCGCCTCCACCCTCTTTTGGAACATCACCGCAGACCTGCTCGCCCCGCTTATCCG
ACTCACCACACCGCCGGCAGACAACGATTGA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-314)

RecC C-terminal domain (RecC_C)

(786-1003)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

61.2

99.164

0.607