Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   LVJ85_RS11910 Genome accession   NZ_CP091522
Coordinates   2434557..2436596 (+) Length   679 a.a.
NCBI ID   WP_244739997.1    Uniprot ID   -
Organism   Neisseria sp. Dent CA1/247     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2429557..2441596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ85_RS11890 (LVJ85_11890) - 2429600..2430838 (+) 1239 WP_244739991.1 DUF6396 domain-containing protein -
  LVJ85_RS11895 (LVJ85_11895) - 2431015..2432256 (+) 1242 WP_244739993.1 DUF6396 domain-containing protein -
  LVJ85_RS11900 (LVJ85_11900) - 2432341..2433003 (-) 663 WP_244739994.1 helix-turn-helix transcriptional regulator -
  LVJ85_RS11905 (LVJ85_11905) - 2433283..2434173 (+) 891 WP_244739995.1 DMT family transporter -
  LVJ85_RS11910 (LVJ85_11910) recG 2434557..2436596 (+) 2040 WP_244739997.1 ATP-dependent DNA helicase RecG Machinery gene
  LVJ85_RS11915 (LVJ85_11915) - 2436758..2437672 (+) 915 WP_244739998.1 tetratricopeptide repeat protein -
  LVJ85_RS11920 (LVJ85_11920) - 2437871..2438485 (+) 615 WP_244740000.1 hypothetical protein -
  LVJ85_RS11925 (LVJ85_11925) - 2438446..2438931 (+) 486 WP_244740002.1 hypothetical protein -
  LVJ85_RS11930 (LVJ85_11930) - 2438973..2439506 (+) 534 WP_244740003.1 alpha/beta hydrolase -
  LVJ85_RS11935 (LVJ85_11935) hpf 2439799..2440119 (-) 321 WP_244740004.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 75237.02 Da        Isoelectric Point: 7.4242

>NTDB_id=652072 LVJ85_RS11910 WP_244739997.1 2434557..2436596(+) (recG) [Neisseria sp. Dent CA1/247]
MTPEHQKLLKITDTAAKKLEKLNLHTPWDVALHLPLRYEDETHIMPIKDAPIGVPCQVEGVVTLQEVQFKPRKQLIVQIQ
DDSGSVLFLRFIHFYPSHQKQMAQGKRIRAVGEIKHGFHGDEMIHPKIRDADNSSLAESLTPVYPTVNGLNQPTLRRIVQ
TALEALPLHDTLPDELLGRLKLPHLAESLRLLHAPPPDYNIRQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRISGQAA
PLHGNGSLTQPLLNALPFALTAAQQRTLSEIRADMRQTHPMHRLLQGDVGSGKTIVAALAALTAVEAGSQVAVMAPTEIL
AEQHYLKFKQWLEPLGLEVAWLSGSQRKKAKDAAKAALSDGLTPIAVGTHALFQEDVQFHNLGLVIVDEQHRFGVAQRLA
LKNKGQDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNSLRRPEVEGFVLNTCRKGRQVYWVCPLIE
ESETLQLQTATETQAALQAALPELTIGLVHGRMKAAEKAQVMAEFAAGRLNVLVATTVIEVGVDVPNASLMVIEHAERMG
LAQLHQLRGRVGRGAAASTCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEED
LHLLEKAREIAPQLIEENPDIVEAHLNRWLASRESYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=652072 LVJ85_RS11910 WP_244739997.1 2434557..2436596(+) (recG) [Neisseria sp. Dent CA1/247]
ATGACACCAGAACACCAAAAGCTGCTCAAAATCACCGACACCGCCGCCAAAAAGCTCGAAAAGCTCAACCTGCACACCCC
GTGGGACGTTGCCCTGCACCTGCCGCTGCGCTACGAAGACGAAACCCACATCATGCCGATTAAAGACGCACCTATCGGCG
TGCCGTGCCAAGTCGAAGGCGTAGTAACCCTGCAAGAAGTACAGTTCAAACCCCGCAAACAGCTCATCGTGCAGATTCAA
GACGACTCCGGCAGTGTACTGTTTCTGCGCTTCATCCACTTCTACCCCAGCCATCAAAAACAAATGGCGCAAGGCAAACG
CATCCGCGCCGTGGGCGAAATCAAACACGGTTTTCACGGCGACGAAATGATCCACCCCAAAATCCGCGATGCCGACAACA
GCAGCCTCGCCGAAAGCCTCACCCCCGTTTACCCCACCGTAAACGGCCTCAACCAACCCACCTTGCGCCGCATCGTTCAG
ACGGCCTTAGAAGCCCTGCCCCTGCACGACACCCTGCCCGACGAACTCCTAGGCCGTCTGAAACTGCCCCACCTGGCCGA
AAGCCTGCGCCTCCTGCACGCCCCGCCGCCCGATTACAACATCCGCCAACTTTCAGACGGCACCCTCCCCGCATGGCAGC
GGCTCAAATTCGACGAACTGCTCGCCCAACAGCTCTCCATGCGGCTCGCACGGCAAAAACGCATCAGCGGACAGGCCGCC
CCCCTGCACGGCAACGGCTCGCTCACCCAACCCCTGCTCAACGCCCTGCCCTTCGCCCTCACCGCCGCCCAACAGCGCAC
CTTAAGCGAAATCCGCGCCGACATGCGCCAAACCCACCCCATGCACCGCCTGCTGCAAGGCGACGTAGGCAGCGGCAAAA
CCATCGTCGCCGCCCTTGCCGCCCTCACCGCAGTCGAAGCCGGCAGCCAAGTCGCCGTCATGGCACCCACCGAAATCCTC
GCCGAACAGCACTACCTCAAATTCAAACAATGGCTCGAACCGCTCGGCCTCGAAGTCGCATGGCTTTCCGGCAGCCAGCG
CAAAAAAGCCAAAGATGCCGCCAAAGCCGCCCTTTCAGACGGCCTCACCCCCATCGCCGTCGGCACCCACGCCCTCTTTC
AAGAAGACGTACAGTTCCACAACCTCGGCCTCGTCATCGTCGACGAACAGCACCGCTTCGGCGTCGCCCAACGCCTCGCC
CTCAAAAACAAAGGCCAAGACGTACACCAGCTCATGATGTCCGCCACCCCCATCCCCCGCACCCTCGCCATGAGCTTTTT
CGCCGACCTCGACGTTTCCGTCATCGACGAACTGCCCCCCGGCCGCACCCCCATCAAAACCCGCCTCGTCAACAGCCTGC
GCCGCCCCGAAGTCGAAGGCTTCGTACTCAACACCTGCCGCAAAGGACGGCAAGTTTACTGGGTCTGCCCCCTCATCGAA
GAAAGCGAAACCCTCCAACTGCAAACCGCCACCGAAACCCAAGCCGCCCTTCAAGCGGCCCTACCCGAACTCACCATCGG
CCTCGTCCACGGCCGCATGAAAGCCGCCGAAAAAGCCCAAGTGATGGCCGAATTTGCCGCAGGCCGTCTGAACGTACTCG
TCGCCACCACCGTTATCGAAGTCGGCGTAGACGTACCCAACGCCAGCCTCATGGTTATCGAACACGCCGAACGCATGGGC
TTGGCACAACTGCACCAACTGCGCGGGCGCGTAGGCCGCGGCGCCGCCGCCAGCACCTGCGTCTTACTCTTCGCCGAACC
TCTGAGCGAGCTGGCCAAAGCCCGCCTCAAAGTCATCTACGAACACACCGACGGCTTCGAAATCGCCCGCCAAGACCTCA
ACATCCGCGGCCCCGGCGAATTTCTCGGTGCACGCCAAAGCGGCGTACCCATGCTCCGCTTCGCCAACCTCGAAGAAGAT
CTGCACCTTTTAGAAAAAGCCCGCGAAATCGCCCCCCAACTGATTGAAGAGAACCCCGACATCGTCGAAGCCCACCTCAA
CCGCTGGCTGGCGAGCAGGGAAAGTTATTTGGGAGTTTGA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(281-418)

Helicase conserved C-terminal domain (Helicase_C)

(467-574)

RecG wedge domain (RecG_wedge)

(12-164)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

84.389

100

0.844