Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   LVJ85_RS09900 Genome accession   NZ_CP091522
Coordinates   2010941..2011495 (-) Length   184 a.a.
NCBI ID   WP_244739569.1    Uniprot ID   -
Organism   Neisseria sp. Dent CA1/247     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2005941..2016495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ85_RS09870 (LVJ85_09870) - 2006119..2007057 (-) 939 WP_370686958.1 serine hydrolase -
  LVJ85_RS09875 (LVJ85_09875) clpX 2007530..2008807 (+) 1278 WP_244739557.1 ATP-dependent Clp protease ATP-binding subunit ClpX -
  LVJ85_RS09880 (LVJ85_09880) - 2008903..2009412 (-) 510 WP_244739567.1 protein disulfide oxidoreductase -
  LVJ85_RS13485 - 2009664..2009840 (-) 177 WP_370686911.1 mechanosensitive ion channel domain-containing protein -
  LVJ85_RS13350 - 2009837..2010211 (-) 375 WP_255733734.1 mechanosensitive ion channel domain-containing protein -
  LVJ85_RS09890 (LVJ85_09890) - 2010473..2010928 (-) 456 WP_304653898.1 type IV pilin protein -
  LVJ85_RS09900 (LVJ85_09900) pilK 2010941..2011495 (-) 555 WP_244739569.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LVJ85_RS09905 (LVJ85_09905) - 2011474..2012403 (-) 930 WP_244739579.1 PilW family protein -
  LVJ85_RS09910 (LVJ85_09910) pilV 2012410..2013144 (-) 735 WP_244739587.1 type IV pilus modification protein PilV -
  LVJ85_RS09915 (LVJ85_09915) - 2013231..2013950 (-) 720 WP_244739594.1 Tfp pilus assembly protein FimT/FimU -
  LVJ85_RS09920 (LVJ85_09920) dnaB 2014194..2015606 (-) 1413 WP_244739596.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19890.27 Da        Isoelectric Point: 5.2850

>NTDB_id=652066 LVJ85_RS09900 WP_244739569.1 2010941..2011495(-) (pilK) [Neisseria sp. Dent CA1/247]
MRKPYTVNYADKSAQQGFSLFIVLMVMIVVAFFVVSATQSYNTEQRISTNDADRKFAAALAEAALRAGEKEIAEFDGVIQ
FTDSCENARCRAAGSAEGSFGDIVVAGNSSVEAWQRSDGGSRAKLYIDTKGTPLPKSGASQDPRYIIEYISTQNDGSVIY
RVTAKAWGKNANTVVVLQSYVSAD

Nucleotide


Download         Length: 555 bp        

>NTDB_id=652066 LVJ85_RS09900 WP_244739569.1 2010941..2011495(-) (pilK) [Neisseria sp. Dent CA1/247]
ATGCGCAAACCGTACACTGTAAATTATGCGGATAAATCGGCACAGCAAGGATTCTCTTTGTTTATTGTGCTGATGGTGAT
GATTGTTGTGGCATTTTTCGTTGTTAGTGCTACACAATCCTACAACACCGAGCAGCGCATCAGCACCAATGACGCAGACC
GGAAATTTGCAGCGGCACTGGCAGAGGCAGCTTTAAGGGCAGGAGAAAAGGAAATCGCAGAGTTTGACGGAGTGATTCAA
TTTACCGATAGCTGTGAAAATGCCAGATGCAGAGCGGCCGGTAGTGCCGAAGGTAGCTTCGGAGATATTGTTGTTGCCGG
TAATTCTTCAGTAGAGGCGTGGCAAAGAAGTGATGGTGGAAGCAGAGCTAAACTTTATATAGATACTAAAGGCACACCGT
TACCCAAGTCCGGAGCCAGTCAAGATCCGCGCTATATTATCGAATATATCAGCACTCAAAATGACGGTTCGGTCATTTAC
CGTGTTACGGCTAAAGCTTGGGGTAAAAATGCCAATACCGTTGTAGTTTTGCAGTCGTATGTATCTGCAGACTAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(114-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

52.02

100

0.56