Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   LVJ85_RS08520 Genome accession   NZ_CP091522
Coordinates   1718767..1720503 (-) Length   578 a.a.
NCBI ID   WP_244738831.1    Uniprot ID   -
Organism   Neisseria sp. Dent CA1/247     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1713767..1725503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ85_RS08495 (LVJ85_08495) - 1714695..1716062 (-) 1368 WP_244738820.1 cytochrome ubiquinol oxidase subunit I -
  LVJ85_RS08500 (LVJ85_08500) - 1716354..1716599 (-) 246 WP_244738821.1 hypothetical protein -
  LVJ85_RS08505 (LVJ85_08505) - 1716808..1717038 (-) 231 WP_244738824.1 hypothetical protein -
  LVJ85_RS08510 (LVJ85_08510) - 1717137..1717370 (+) 234 WP_244738826.1 hypothetical protein -
  LVJ85_RS08515 (LVJ85_08515) - 1717505..1718689 (-) 1185 WP_244738829.1 acetylornithine/succinyldiaminopimelate transaminase -
  LVJ85_RS08520 (LVJ85_08520) recD 1718767..1720503 (-) 1737 WP_244738831.1 exodeoxyribonuclease V subunit alpha Machinery gene
  LVJ85_RS08525 (LVJ85_08525) tpx 1720652..1721146 (-) 495 WP_085363076.1 thiol peroxidase -
  LVJ85_RS08530 (LVJ85_08530) - 1721180..1721785 (-) 606 WP_244743133.1 DUF4230 domain-containing protein -
  LVJ85_RS08535 (LVJ85_08535) - 1722073..1723332 (-) 1260 WP_244738833.1 DUF2254 domain-containing protein -
  LVJ85_RS08540 (LVJ85_08540) tmk 1723465..1724091 (-) 627 WP_244738837.1 dTMP kinase -
  LVJ85_RS08545 (LVJ85_08545) mltG 1724263..1725258 (-) 996 WP_244738840.1 endolytic transglycosylase MltG -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 63198.21 Da        Isoelectric Point: 6.4078

>NTDB_id=652062 LVJ85_RS08520 WP_244738831.1 1718767..1720503(-) (recD) [Neisseria sp. Dent CA1/247]
MSYDDLNQAAADAAVAMLRRHAPEEAEVVEPYVSKLFAALQEGHAYIWLEEHEARSLQRAQSVVGSSGDTPLILAGRKLF
LGRIWQLERDLAAEIVRLAGAAVPPVDWLQAGRNLEAWFGLEGSNGQRDAAALALLKPFMLISGGPGTGKTTTVAKLLGL
LCGHAGKLPRIALAAPTGKAAAHMARALHKALATFDLPDAVRNHLLQLEGQTVHRLLKLRPPQMLPLFDREQPLPLDILI
IDEASMLDIALLLQLLQAVPSGCRVVLLGDENQLPSVGAGAVLSELAQKTVLTAETTQELEAMLPQHGFTMAEHAPLLAE
NVARLQVSHRFGDNSGIGCLARAVAAENADEAWAQFARFPDVLEVRAGSGKQQAEELYRCQQRYWQAVDAGDVAAAFQHQ
GDAVVLAARRDDAQAFNEEYRRCLQRHGRARADAPWFAGQVVMVSRNDYALDVFNGDIGLILPDDEQPDVLAAYFPVAGS
YRKIALSRLPVHETAFAMTVHKSQGSEYREVWLLPPRQAEAGNAHGLNKALLYTAVTRARERFVFWGGKEVFQTACTLNE
RRRSALREMIRSNGFLAD

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=652062 LVJ85_RS08520 WP_244738831.1 1718767..1720503(-) (recD) [Neisseria sp. Dent CA1/247]
ATGTCTTACGATGATTTGAACCAAGCGGCTGCCGATGCGGCGGTGGCCATGCTCAGACGCCATGCGCCCGAAGAGGCGGA
GGTGGTGGAGCCTTATGTATCCAAGCTGTTTGCCGCTTTACAGGAAGGGCATGCGTATATTTGGCTGGAAGAACACGAAG
CGCGCTCTTTGCAGCGGGCGCAATCGGTGGTGGGCAGCAGCGGTGATACGCCGTTGATTTTAGCGGGCAGAAAGCTTTTT
CTGGGGCGGATATGGCAGCTCGAGCGCGATTTGGCTGCGGAGATTGTGCGTTTGGCCGGTGCTGCCGTGCCGCCGGTGGA
CTGGTTGCAGGCAGGGCGGAATTTGGAGGCTTGGTTCGGTTTGGAAGGCAGCAACGGCCAGCGTGATGCGGCGGCATTGG
CTTTGCTGAAACCTTTTATGCTGATCAGCGGCGGGCCGGGTACGGGTAAAACCACGACGGTGGCGAAACTGCTCGGTTTG
CTGTGCGGCCATGCGGGTAAGCTGCCGCGCATTGCGTTGGCCGCGCCTACGGGCAAAGCGGCGGCACACATGGCGCGGGC
TTTGCATAAGGCGTTGGCTACATTCGATTTGCCCGACGCGGTGCGCAACCATCTGCTGCAACTGGAAGGGCAGACCGTGC
ACCGCTTGCTGAAACTGCGTCCGCCGCAGATGTTGCCGCTGTTTGATCGCGAGCAGCCCTTGCCGCTGGATATTTTGATT
ATCGACGAAGCGTCTATGCTCGATATCGCGTTGCTGTTGCAGCTTTTGCAGGCGGTGCCGTCGGGCTGCCGTGTGGTGCT
GTTGGGCGATGAAAACCAGCTGCCTTCGGTGGGCGCCGGTGCGGTTTTGTCGGAGCTGGCTCAGAAAACGGTGCTGACTG
CCGAAACGACGCAAGAATTGGAAGCGATGTTGCCGCAACATGGTTTTACGATGGCGGAACACGCGCCGCTGTTGGCGGAA
AACGTGGCGCGTTTGCAGGTGAGCCACCGCTTCGGCGACAACAGCGGTATCGGCTGTTTGGCGCGGGCGGTGGCGGCCGA
AAATGCCGACGAAGCGTGGGCGCAGTTTGCCCGTTTCCCCGACGTGCTCGAAGTGAGGGCGGGCAGCGGCAAGCAGCAGG
CGGAAGAGCTTTACCGTTGCCAGCAGCGCTATTGGCAAGCGGTGGACGCGGGCGATGTGGCGGCGGCATTTCAGCATCAG
GGTGATGCGGTGGTGCTGGCGGCGAGGCGTGATGACGCGCAGGCGTTTAACGAAGAATACCGCCGCTGCCTGCAACGCCA
CGGACGCGCCCGTGCGGATGCGCCGTGGTTTGCGGGGCAGGTGGTGATGGTGTCGCGCAACGATTATGCGCTGGACGTGT
TTAACGGCGACATCGGCCTGATTTTGCCCGACGACGAACAGCCAGATGTGCTGGCGGCTTATTTTCCCGTGGCGGGCAGT
TACCGCAAAATCGCCCTCAGCCGCCTGCCCGTGCATGAAACCGCTTTTGCCATGACCGTGCATAAAAGCCAGGGTTCGGA
GTATCGCGAAGTGTGGCTGTTGCCGCCGAGGCAGGCCGAAGCGGGCAATGCGCACGGTTTGAACAAAGCTTTGTTATATA
CCGCCGTTACACGCGCCCGCGAGCGTTTTGTGTTTTGGGGCGGCAAAGAGGTTTTTCAGACGGCCTGTACGCTCAATGAA
CGCCGCCGCAGTGCTTTGCGCGAAATGATACGGAGCAACGGTTTCCTCGCAGACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(124-308)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(495-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

58.435

99.481

0.581