Detailed information NTG0065206

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H7R15_RS05200
• Genome accession: NZ_AP022032
• Coordinates: 1104038..1105030 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain WP3-S18-ESBL-08
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1099038..1110030

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7R15_RS05170 (WP3S18E08_10180)	ispD	1099099..1099809 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H7R15_RS05175 (WP3S18E08_10190)	ispF	1099809..1100288 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H7R15_RS05180 (WP3S18E08_10200)	truD	1100285..1101334 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
H7R15_RS05185 (WP3S18E08_10210)	surE	1101315..1102076 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H7R15_RS05190 (WP3S18E08_10220)	pcm	1102070..1102696 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H7R15_RS05195 (WP3S18E08_10230)	nlpD	1102881..1103975 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
H7R15_RS05200 (WP3S18E08_10240)	rpoS	1104038..1105030 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H7R15_RS05205 (WP3S18E08_10250)	-	1105201..1105752 (-)	552	WP_001179444.1	flavodoxin family protein	-
H7R15_RS05210 (WP3S18E08_10260)	-	1105977..1107020 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
H7R15_RS05215 (WP3S18E08_10270)	ygbN	1107163..1108527 (-)	1365	WP_000104433.1	GntP family transporter	-
H7R15_RS05220 (WP3S18E08_10280)	ygbM	1108616..1109392 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=65206 H7R15_RS05200 WP_000081550.1 1104038..1105030(+) (rpoS) [Escherichia coli strain WP3-S18-ESBL-08]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=65206 H7R15_RS05200 WP_000081550.1 1104038..1105030(+) (rpoS) [Escherichia coli strain WP3-S18-ESBL-08]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715