Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHT76_RS03725 Genome accession   NZ_CP108053
Coordinates   747759..748775 (-) Length   338 a.a.
NCBI ID   WP_328869274.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00287     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 742759..753775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT76_RS03705 (OHT76_03715) - 744027..744875 (+) 849 WP_328869270.1 aldo/keto reductase -
  OHT76_RS03710 (OHT76_03720) - 744889..745563 (+) 675 WP_328869271.1 flavodoxin -
  OHT76_RS03715 (OHT76_03725) - 745711..746985 (+) 1275 WP_328869272.1 FAD-binding oxidoreductase -
  OHT76_RS03720 (OHT76_03730) - 747002..747700 (+) 699 WP_328869273.1 flavodoxin -
  OHT76_RS03725 (OHT76_03735) cytR 747759..748775 (-) 1017 WP_328869274.1 LacI family DNA-binding transcriptional regulator Regulator
  OHT76_RS03730 (OHT76_03740) - 748993..750732 (+) 1740 WP_328869275.1 cellulase family glycosylhydrolase -
  OHT76_RS03735 (OHT76_03745) - 750812..751477 (-) 666 WP_328869276.1 NAD(P)-binding domain-containing protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36140.13 Da        Isoelectric Point: 5.9851

>NTDB_id=652057 OHT76_RS03725 WP_328869274.1 747759..748775(-) (cytR) [Streptomyces sp. NBC_00287]
MADRGTDGARPVTIAYIAESAGVSVPTVSKVINGKSGVSADTRARVEELVNRYGYRKPAGANRNNTVELVFRELESMWAV
EVIRGVERVARRHGVGVLVSKFGLHDSTPATWDDTVSRRPNCVLSVAQLSEAEREQLRAKGIPFVVFDPTVELPDDVPFV
GATNWSGGRAATRHLVELGHRRIAMISGPETVLCCCARMDGYRSALQSAGLPLDPELVVHTGLTREDGRAAAGALLSLPE
PPTAIFTANDLQALGVYRAARDAGLRIPEDLSVVGFDDLPVVAWVEPPLTTVHQPLTEMAVAATEMALALGRGEDAPQAR
LEIGTTLTVRASTAPPKN

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=652057 OHT76_RS03725 WP_328869274.1 747759..748775(-) (cytR) [Streptomyces sp. NBC_00287]
TTGGCGGACCGCGGAACCGACGGGGCCCGGCCGGTGACCATCGCCTATATCGCCGAGTCGGCGGGGGTGTCGGTGCCGAC
CGTGTCCAAGGTGATCAACGGCAAGTCGGGGGTGTCCGCGGACACGCGCGCCCGGGTCGAGGAACTGGTCAACAGATACG
GCTACCGCAAGCCCGCCGGCGCGAACCGCAACAACACCGTGGAACTCGTCTTCCGCGAGCTGGAGAGCATGTGGGCGGTC
GAGGTCATCCGCGGAGTGGAGCGGGTGGCCCGTCGGCATGGCGTCGGCGTGCTGGTCTCCAAGTTCGGCCTGCATGACAG
CACCCCGGCGACCTGGGACGACACCGTGTCCCGGCGCCCCAACTGTGTCCTTTCCGTCGCCCAGTTGTCCGAGGCCGAGC
GGGAGCAGCTGAGGGCGAAGGGGATCCCGTTCGTCGTCTTCGATCCGACCGTCGAGCTTCCCGACGACGTCCCGTTCGTC
GGCGCCACCAACTGGTCCGGAGGACGGGCCGCGACCCGGCACCTGGTCGAGCTGGGGCATCGACGCATCGCGATGATCAG
CGGGCCCGAGACCGTCCTGTGCTGCTGCGCCCGCATGGACGGCTACCGCTCCGCACTGCAGAGCGCGGGCCTGCCGCTCG
ATCCCGAACTCGTCGTGCACACCGGCCTGACCCGCGAGGACGGCCGCGCCGCGGCCGGCGCACTGCTCTCCCTTCCGGAG
CCGCCCACCGCGATCTTCACGGCCAACGACCTTCAGGCACTGGGCGTCTACCGAGCCGCCCGCGATGCCGGACTGCGCAT
CCCGGAGGACCTGAGCGTGGTCGGCTTCGACGACCTGCCGGTGGTCGCGTGGGTGGAACCGCCCCTGACCACCGTCCATC
AGCCGCTGACCGAAATGGCCGTCGCGGCAACCGAGATGGCACTCGCCCTCGGCCGCGGCGAGGACGCTCCGCAGGCTCGC
CTGGAGATCGGGACGACCCTGACCGTCCGCGCCAGCACCGCGCCGCCGAAGAACTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(172-333)

Bacterial regulatory proteins, lacI family (LacI)

(13-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.232

100

0.37
  cytR Vibrio parahaemolyticus RIMD 2210633

36.418

99.112

0.361