Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LVJ85_RS04580 Genome accession   NZ_CP091522
Coordinates   934920..937145 (+) Length   741 a.a.
NCBI ID   WP_244743030.1    Uniprot ID   -
Organism   Neisseria sp. Dent CA1/247     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 929920..942145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ85_RS04560 (LVJ85_04560) ubiB 930945..932456 (-) 1512 WP_244743026.1 ubiquinone biosynthesis regulatory protein kinase UbiB -
  LVJ85_RS04565 (LVJ85_04565) - 932874..933575 (+) 702 WP_244741855.1 hypothetical protein -
  LVJ85_RS04570 (LVJ85_04570) - 933640..933809 (-) 170 Protein_882 lipoprotein signal peptidase -
  LVJ85_RS04575 (LVJ85_04575) - 933875..934750 (+) 876 WP_244741857.1 cation diffusion facilitator family transporter -
  LVJ85_RS04580 (LVJ85_04580) comA 934920..937145 (+) 2226 WP_244743030.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LVJ85_RS04585 (LVJ85_04585) - 937394..938128 (-) 735 WP_244741860.1 ankyrin repeat domain-containing protein -
  LVJ85_RS04590 (LVJ85_04590) - 938434..940476 (-) 2043 WP_115133672.1 OPT family oligopeptide transporter -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80740.52 Da        Isoelectric Point: 10.3130

>NTDB_id=652054 LVJ85_RS04580 WP_244743030.1 934920..937145(+) (comA) [Neisseria sp. Dent CA1/247]
MFWLPLWVSGVVVSFALPAVPSWTALAAVWLCLFAAAWRFRTAAWLLICFSGALYGIGRTQAALEKQWPAVQTASVPLTV
KVADLPQRDDKRVRFTAVARDDAGREYRLLLSDYRLRDWPVGSEWRVQARVRPPVGEANLRGFNREAWALANGIGGVGSI
GKERQAAAQNRAGGLSAWRETVSLRWQQTDTRGRDFSDGLGLMRALSIGEQSALSAQAWQAFRPLGLNHLVSISGLHVSM
VAVLAGWLTKQLLRLLPRVPKRPRAWMLAAGLAAALFYAGLAGFSVPTQRSVLMLLALAWAWRRGSGASVWTGWWQALAV
VLLFDPLAVLSAGFWLSFGLVGALLWVSAGRLNERGWLLAVRGQWAVSLLSVVALGSMFASLPLISPLVNALAIPWFSWV
LVPLALLASLLPFGWLQWLAAAAGEYTMRLLVLTAQVAPEYAVAAAPPYLLPLAVAAAMIALLPRGTGWKPLAWLVLAGF
VLYRPPPLAEGRLKVTVWDAGQGLSVLMQTKEHNLLFDTGTEHIANAQILPGLNAAGVRGLDVLVLSHHDTDHDGGFTEI
RQAKQPREIRAGQPEFYQGARFCRERQWQWNGVVFEFLRPSENSKTADDNEQSCVLRVLAGGQSLLVTGDLGKRGELALV
EKYGEGLYSQVLVLGHHGSDTSSAGGFLNAVSPQYAVASSGYANAYKHPAAAVQNRVKAHGITLLRTDLSGGLVFEFGAG
EEVQVGRLKTDKPYWQRKPFE

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=652054 LVJ85_RS04580 WP_244743030.1 934920..937145(+) (comA) [Neisseria sp. Dent CA1/247]
ATGTTTTGGCTGCCGCTTTGGGTAAGCGGCGTTGTTGTTTCGTTTGCGCTGCCCGCCGTGCCGTCTTGGACGGCGCTGGC
GGCGGTATGGCTGTGCCTGTTTGCGGCGGCGTGGCGGTTTCGGACGGCGGCGTGGCTGCTGATATGTTTTTCCGGCGCGT
TATACGGCATTGGGCGTACGCAAGCTGCTTTGGAAAAACAATGGCCTGCGGTTCAGACGGCCTCTGTGCCGCTTACGGTA
AAAGTGGCGGATTTGCCGCAGCGCGACGATAAACGGGTGCGTTTTACGGCTGTTGCGCGCGATGATGCGGGGCGGGAATA
CCGTTTGCTGCTGTCCGACTACCGTTTGCGCGATTGGCCGGTCGGCAGCGAATGGCGGGTGCAGGCGCGGGTAAGGCCGC
CGGTGGGCGAGGCGAATCTGCGCGGTTTCAACCGTGAGGCGTGGGCGTTGGCCAACGGCATCGGCGGCGTGGGCAGCATC
GGCAAAGAGCGGCAGGCTGCGGCGCAAAACCGTGCCGGCGGTTTATCGGCTTGGCGCGAAACGGTCAGCCTGCGTTGGCA
GCAAACCGACACCCGCGGGCGCGATTTTTCAGACGGCCTCGGTTTGATGCGGGCGTTGAGCATCGGCGAGCAATCGGCTT
TGAGCGCGCAGGCGTGGCAGGCGTTTCGGCCTTTGGGTTTGAACCATCTGGTGAGTATTTCCGGCCTGCATGTGAGCATG
GTGGCGGTGCTGGCAGGGTGGCTGACGAAGCAGTTGCTGCGCCTGCTCCCGCGCGTACCGAAACGGCCGCGGGCGTGGAT
GCTGGCGGCGGGTTTGGCGGCGGCGTTGTTTTATGCGGGCTTGGCGGGCTTTTCGGTGCCGACGCAGCGCAGCGTGTTGA
TGCTGCTTGCTCTGGCATGGGCTTGGCGGCGCGGCAGCGGTGCGTCGGTGTGGACGGGTTGGTGGCAGGCGCTGGCGGTG
GTGCTGTTGTTCGACCCGTTGGCGGTATTGAGCGCGGGGTTTTGGCTGTCGTTCGGCTTGGTCGGCGCTTTGCTGTGGGT
GTCGGCAGGCCGTCTGAACGAACGCGGCTGGCTGTTGGCGGTGCGCGGGCAATGGGCGGTGTCGCTGTTGTCGGTGGTGG
CGTTGGGCAGTATGTTCGCTTCGCTGCCTTTAATCAGCCCGTTGGTGAATGCGTTGGCGATTCCGTGGTTTTCGTGGGTA
TTGGTGCCGCTGGCTCTGCTGGCTTCGTTGTTGCCGTTTGGTTGGCTGCAATGGCTGGCGGCTGCGGCGGGCGAATACAC
GATGCGGCTGCTGGTGCTCACGGCACAAGTTGCGCCCGAATATGCGGTTGCCGCCGCTCCGCCTTATTTGCTGCCGTTGG
CGGTGGCGGCAGCGATGATTGCGCTGCTGCCGCGCGGCACGGGCTGGAAACCGCTGGCATGGTTGGTGTTGGCGGGCTTT
GTGCTGTACCGCCCGCCGCCGCTTGCGGAAGGCCGTCTGAAAGTAACGGTATGGGACGCGGGGCAGGGTTTGTCGGTGTT
GATGCAGACGAAAGAGCATAATCTGTTGTTCGACACTGGCACGGAGCACATCGCCAACGCGCAGATTCTGCCCGGCCTGA
ATGCTGCGGGTGTGCGCGGTTTGGACGTGCTGGTGCTGTCGCACCACGATACCGACCACGACGGCGGTTTCACTGAAATC
CGCCAAGCCAAACAGCCGCGCGAAATCCGGGCTGGGCAGCCTGAGTTTTATCAGGGCGCGCGGTTTTGCAGGGAGCGGCA
ATGGCAATGGAACGGCGTGGTGTTTGAGTTTTTGAGGCCGTCTGAAAACTCGAAAACGGCCGACGACAACGAGCAAAGCT
GCGTTTTGCGCGTGCTGGCGGGCGGTCAGTCGCTGCTGGTAACGGGCGATTTGGGCAAACGCGGCGAGCTGGCGTTGGTG
GAAAAATACGGCGAAGGCTTGTACAGCCAAGTGCTGGTGCTGGGACATCACGGCAGCGACACTTCGTCGGCAGGCGGCTT
TCTGAATGCCGTTTCTCCGCAATACGCCGTGGCTTCGAGCGGCTATGCCAATGCTTACAAACACCCCGCCGCTGCGGTGC
AAAACCGCGTGAAAGCGCACGGCATTACGCTGCTGCGTACCGATTTGTCGGGCGGCTTGGTGTTTGAATTCGGCGCGGGG
GAAGAGGTGCAGGTAGGCCGTCTGAAAACGGATAAACCTTATTGGCAGAGGAAGCCGTTTGAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-656)

Domain of unknown function (DUF4131) (DUF4131)

(22-162)

Competence protein (Competence)

(206-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

64.189

99.865

0.641