Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   LVJ85_RS04020 Genome accession   NZ_CP091522
Coordinates   822987..826604 (-) Length   1205 a.a.
NCBI ID   WP_244741650.1    Uniprot ID   -
Organism   Neisseria sp. Dent CA1/247     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 817987..831604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ85_RS04005 (LVJ85_04005) dnaG 819828..821603 (-) 1776 WP_244741646.1 DNA primase -
  LVJ85_RS04010 (LVJ85_04010) - 821673..822119 (-) 447 WP_244741648.1 GatB/YqeY domain-containing protein -
  LVJ85_RS04015 (LVJ85_04015) rpsU 822450..822662 (-) 213 WP_054600191.1 30S ribosomal protein S21 -
  LVJ85_RS04020 (LVJ85_04020) recB 822987..826604 (-) 3618 WP_244741650.1 exodeoxyribonuclease V subunit beta Machinery gene
  LVJ85_RS04025 (LVJ85_04025) - 826924..828243 (+) 1320 WP_244741653.1 MFS transporter -
  LVJ85_RS04030 (LVJ85_04030) - 828330..829433 (-) 1104 WP_244741655.1 metallophosphoesterase -
  LVJ85_RS04035 (LVJ85_04035) - 829643..830545 (+) 903 WP_244741657.1 Dyp-type peroxidase -
  LVJ85_RS04040 (LVJ85_04040) - 830701..831603 (-) 903 WP_244741660.1 recombination-associated protein RdgC -

Sequence

Protein


Download         Length: 1205 a.a.        Molecular weight: 134934.24 Da        Isoelectric Point: 5.6434

>NTDB_id=652053 LVJ85_RS04020 WP_244741650.1 822987..826604(-) (recB) [Neisseria sp. Dent CA1/247]
MPAQPFNPLTIPISGTNLIEASAGTGKTYGIAALFTRLIVLEKMSVESVLVVTFTKAATAELKTRLRARLDEVLSVLEKV
PDAAQNSDGLEAYCAEHYEGDVFLPGLLETALQQESQERLIVRLKAAISRFDNAAIYTIHGFCQRLLRDYAFFCQAPFDV
ELTEDTRERLLEPTQDFWRENVSHNPLLARLVFKHGYTPQDMLSQIKSFISRPYLTFRRPESDVEAAEKALAECWEKVRA
RLPELAQTFWAVHPALNGTKYRKATFQNVFALLEAAAENNTLPPNHEKLPLFAATALEAATKKGNTPDAAAYARLAILAR
LGQYFDDLAEAEENTLIRLQTDMLEYIGNALETRKKSRRERGFDDLLLDVYRALIESPHRELLAQTVAATWKAALIDEFQ
DTDPLQYAIFERLFIRQGNPLFLVGDPKQAIYSFRGADIYAYMQAAEQADAHYTLATNFRSHAKLINGIGALFKEKNRPF
VLDSIDYADVGAARDTGRLNPPQNAIVVRWLNNGDDEGSNKDLLRSRAADYCADEIATALNDAAAGRLKYKKNSNSPAAP
LQSGQIAVLVRTHNEGQMIAKALKQRNIQSVLLQRESVFASEEAEALAALIGFWLQPQRTEMLRFVLGGVLFRHTAAMIH
ELNHNESALLSWINSAQTAAETWQRHGIYAAMQHFAAEHGIESRLLSRGSTRSLTNYHQLVERLAEEDEQSRSPAALRQW
FESQIQTAQDAGQPNGENNLLRLESDENLVKIVTMHAAKGLQYPLVYCPFVWDAKKNDLKGWQILHRPHQTTELLHEKQL
DDTDRNQLADENLSENLRLLYVALTRAEEHLVIYAAYCSNTPDNTFAYLLEGTADSRRADIAAAYAAEKKEAAAMLKNNW
QRFIGNAPADTDFSFTDTAPEPAVYRLPPVSDGLYQAADIPSRPFEFIRHTSFTGLSRHTRSHDEHTREELQPAIDTAET
AADTPPPMPSENTDTRSIHTFPRGAGAGVCLHEILETFDFSTPAAAQSEAVAATLEHYGFEADRLPAVTAMLDHTRLAPL
DGQTALADIPADRRLAEMGFTLFMHDFKLERLQQWFARADHGLPAECAAAAKLLDFSDVKGFLNGFIDMVCQYSDGLVTV
IDYKSNHLGYTAEDYTPAAMNEAVAHHHYYLQALIYAIATARHFASRNRPLHTVAVRYLFLRGLDGSSNGIWSWNIPTAL
LQEWL

Nucleotide


Download         Length: 3618 bp        

>NTDB_id=652053 LVJ85_RS04020 WP_244741650.1 822987..826604(-) (recB) [Neisseria sp. Dent CA1/247]
ATGCCAGCACAACCGTTCAACCCGCTCACCATTCCCATTTCAGGCACCAACCTCATCGAAGCCTCTGCCGGCACGGGCAA
AACTTACGGCATCGCCGCCTTGTTTACCCGCCTGATTGTGCTGGAAAAAATGTCGGTAGAAAGCGTGCTGGTCGTTACCT
TTACCAAAGCCGCTACCGCCGAGCTGAAAACCCGTCTGCGGGCGCGTTTGGACGAAGTTTTGTCGGTATTGGAAAAAGTA
CCCGACGCCGCACAAAATTCAGACGGCCTCGAAGCCTATTGCGCCGAACACTACGAAGGCGACGTCTTTTTGCCCGGCCT
GCTCGAAACCGCCTTGCAGCAAGAAAGCCAAGAGCGCCTGATTGTGCGCCTTAAAGCCGCCATCAGCCGTTTCGACAACG
CCGCCATCTACACCATCCACGGCTTCTGCCAACGCCTGCTGCGCGATTACGCCTTTTTCTGCCAAGCCCCTTTCGATGTG
GAGCTAACCGAAGACACGCGCGAACGCCTGCTCGAACCCACCCAAGATTTCTGGCGCGAAAACGTGTCGCACAATCCCTT
ATTGGCCAGGCTGGTGTTCAAGCACGGCTACACGCCGCAAGACATGCTGTCCCAAATCAAAAGCTTTATCAGCCGCCCGT
ATCTTACTTTCAGACGGCCTGAAAGCGATGTGGAAGCCGCAGAAAAAGCATTGGCGGAATGCTGGGAAAAAGTGCGCGCC
CGATTGCCAGAGTTGGCGCAAACCTTTTGGGCTGTCCACCCCGCTTTAAACGGCACCAAATACCGCAAAGCTACCTTCCA
AAACGTCTTTGCCCTGCTGGAAGCCGCGGCAGAAAACAACACCCTGCCCCCCAACCACGAAAAACTGCCCCTGTTTGCCG
CCACAGCTTTGGAAGCCGCCACCAAAAAAGGTAACACGCCCGATGCCGCAGCCTATGCCCGCTTAGCGATACTCGCCCGC
CTCGGACAATACTTCGACGACTTAGCCGAAGCCGAAGAAAACACCTTGATACGGCTGCAAACCGACATGCTCGAATACAT
CGGCAACGCGTTGGAAACACGCAAAAAATCCCGCCGCGAACGCGGTTTCGACGACTTGCTGCTAGACGTTTACCGCGCCC
TAATTGAAAGCCCGCACCGCGAACTGCTGGCACAAACCGTCGCCGCCACTTGGAAAGCCGCACTCATCGACGAATTTCAA
GACACCGACCCGCTGCAATACGCCATTTTCGAACGGCTGTTTATCCGCCAAGGCAACCCGCTGTTTCTCGTCGGCGACCC
CAAGCAGGCCATTTACAGCTTTCGCGGTGCCGACATCTACGCCTACATGCAGGCCGCCGAGCAAGCCGACGCGCACTACA
CGCTCGCCACCAACTTCCGCAGCCACGCCAAGCTGATCAACGGCATCGGCGCACTGTTCAAAGAAAAAAACCGCCCCTTC
GTGCTCGACAGCATCGACTATGCCGACGTCGGCGCCGCCCGCGACACAGGCCGTCTGAATCCGCCCCAAAACGCCATTGT
CGTGCGTTGGCTGAACAACGGCGACGACGAAGGCAGCAACAAAGACTTATTGCGCAGCCGTGCCGCCGATTATTGCGCCG
ACGAAATCGCCACGGCACTCAACGATGCCGCAGCAGGCCGTCTGAAATACAAAAAAAACAGCAATAGCCCTGCCGCACCG
CTGCAATCGGGGCAAATCGCCGTACTCGTACGCACCCACAACGAAGGGCAAATGATTGCCAAAGCCCTAAAACAGCGCAA
CATCCAAAGCGTGCTGCTGCAACGTGAATCCGTGTTTGCCTCCGAAGAAGCCGAAGCCCTTGCCGCACTCATCGGCTTTT
GGCTGCAACCGCAACGCACCGAAATGCTGCGCTTCGTGCTCGGCGGCGTTTTGTTCCGACATACCGCCGCCATGATCCAC
GAACTCAACCACAACGAATCCGCCCTGCTCTCGTGGATAAACTCAGCCCAAACCGCCGCCGAAACTTGGCAGCGGCACGG
CATCTACGCCGCCATGCAGCACTTTGCCGCCGAACACGGCATCGAAAGCCGCCTGCTCTCGCGCGGCAGTACGCGCAGCC
TGACCAACTACCACCAGCTTGTCGAAAGGCTGGCCGAAGAAGACGAACAAAGCCGCTCGCCCGCCGCACTCCGGCAATGG
TTCGAAAGCCAAATTCAGACGGCACAAGATGCCGGCCAACCCAACGGAGAAAACAACCTCTTGCGTCTGGAAAGCGATGA
AAACCTGGTTAAAATCGTGACCATGCACGCCGCCAAAGGTTTACAGTATCCGCTCGTGTATTGCCCGTTTGTGTGGGATG
CCAAAAAAAACGACCTCAAAGGCTGGCAGATACTCCACCGCCCGCACCAAACCACCGAACTGCTGCACGAAAAACAACTC
GACGACACCGACCGCAACCAGCTCGCCGATGAAAACCTGAGCGAAAACCTGCGCCTGCTTTACGTTGCCCTCACCCGTGC
CGAAGAGCATCTGGTTATCTATGCCGCCTATTGCAGCAACACGCCCGACAACACCTTCGCCTACCTGCTCGAAGGCACTG
CCGACAGCCGCCGCGCCGATATCGCCGCCGCTTACGCTGCCGAAAAAAAAGAAGCCGCCGCCATGCTGAAAAACAACTGG
CAGCGGTTCATCGGCAACGCCCCCGCCGATACAGACTTCAGCTTTACCGACACCGCGCCCGAACCGGCGGTTTACCGATT
GCCGCCCGTTTCAGACGGCCTCTACCAAGCTGCCGACATCCCTTCGCGCCCGTTTGAATTTATCCGCCACACCAGCTTTA
CCGGCCTGAGCCGCCACACCCGCAGCCACGACGAACACACCCGCGAAGAGCTGCAACCGGCAATAGATACCGCAGAAACC
GCCGCCGACACACCGCCGCCCATGCCGTCTGAAAATACCGACACCCGCAGCATCCACACCTTCCCGCGCGGTGCAGGCGC
AGGCGTATGCCTGCACGAAATTCTGGAAACCTTCGATTTCAGCACACCCGCCGCCGCGCAAAGCGAAGCCGTGGCCGCCA
CATTGGAACACTACGGTTTCGAAGCCGACCGGCTGCCCGCCGTTACCGCCATGCTCGACCACACCCGCCTTGCCCCGCTC
GACGGCCAAACCGCTCTGGCCGACATCCCCGCCGACCGCCGCCTTGCCGAAATGGGCTTCACCCTGTTTATGCACGACTT
CAAGCTCGAACGCCTGCAACAATGGTTCGCCCGAGCAGACCACGGCCTGCCCGCCGAATGCGCGGCCGCCGCCAAACTGC
TGGATTTCAGCGACGTAAAAGGCTTCCTCAACGGTTTCATCGACATGGTATGCCAATATTCAGACGGCCTCGTAACCGTT
ATCGACTACAAATCCAACCACTTGGGTTACACCGCCGAAGACTATACACCGGCGGCCATGAACGAAGCCGTCGCCCACCA
CCACTATTACCTGCAAGCCCTGATTTACGCCATCGCTACCGCCCGCCATTTCGCCTCCCGCAACCGGCCGCTGCATACCG
TTGCCGTGCGCTATCTCTTTCTGCGCGGCTTAGACGGCAGCAGCAACGGCATCTGGTCGTGGAACATTCCCACCGCACTT
TTGCAGGAATGGCTGTAA

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(8-449)

UvrD-like helicase C-terminal domain (UvrD_C)

(453-834)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

59.604

100

0.6