Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT76_RS00820 Genome accession   NZ_CP108053
Coordinates   149772..150434 (-) Length   220 a.a.
NCBI ID   WP_328868753.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00287     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 144772..155434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT76_RS00805 (OHT76_00815) - 146787..147164 (+) 378 WP_328868750.1 hypothetical protein -
  OHT76_RS00810 (OHT76_00820) - 147170..148453 (+) 1284 WP_328868751.1 hypothetical protein -
  OHT76_RS00815 (OHT76_00825) - 149255..149506 (-) 252 WP_328868752.1 hypothetical protein -
  OHT76_RS00820 (OHT76_00830) vraR 149772..150434 (-) 663 WP_328868753.1 response regulator transcription factor Regulator
  OHT76_RS00825 (OHT76_00835) - 150409..151581 (-) 1173 WP_328868754.1 histidine kinase -
  OHT76_RS00830 (OHT76_00840) - 151757..154027 (+) 2271 WP_328868755.1 MMPL family transporter -
  OHT76_RS00835 (OHT76_00845) - 154231..154437 (-) 207 WP_328876422.1 Tn3 family transposase -
  OHT76_RS00840 (OHT76_00850) - 154534..155126 (-) 593 Protein_167 Tn3 family transposase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23498.24 Da        Isoelectric Point: 5.0710

>NTDB_id=652052 OHT76_RS00820 WP_328868753.1 149772..150434(-) (vraR) [Streptomyces sp. NBC_00287]
MSIRVLVADDQTIIRTGLRIMLNAQPGIEVVGEAADGQEAVRLARELRPDVCLFDIRMPVLDGLEATRLVAGPGVADPLA
VVVITTFDLDEYVYGSLRAGARGFLLKDTGPDLLAQAVRSASDGEALIAPSVTVRLLQTFADLPAGRPVAQPVSPVTARE
EQVLLAVARGLTNTEIADALHISLSTVKTHLASLMAKLGARNRVEIAMWAYETRRILPGT

Nucleotide


Download         Length: 663 bp        

>NTDB_id=652052 OHT76_RS00820 WP_328868753.1 149772..150434(-) (vraR) [Streptomyces sp. NBC_00287]
GTGTCCATTCGCGTCCTCGTCGCTGACGACCAGACGATCATCCGCACCGGGTTGCGGATCATGCTGAACGCCCAGCCCGG
CATCGAGGTGGTCGGCGAGGCCGCCGACGGACAGGAAGCGGTACGTCTGGCCCGCGAACTGCGCCCCGACGTCTGTCTGT
TCGACATCCGCATGCCCGTACTCGACGGGCTCGAGGCCACCCGGCTGGTCGCCGGCCCGGGCGTCGCCGACCCGCTGGCC
GTGGTCGTCATCACCACGTTCGACCTCGACGAGTACGTCTACGGCTCACTGCGTGCCGGCGCCCGCGGATTCCTCCTCAA
AGACACGGGACCAGACCTTCTGGCCCAGGCCGTACGGTCGGCGTCCGACGGTGAGGCGCTCATTGCCCCCAGCGTCACCG
TCCGTCTGCTCCAGACATTCGCGGACCTGCCCGCCGGCCGGCCCGTGGCCCAGCCGGTCTCCCCCGTCACCGCCCGCGAG
GAGCAGGTGCTCCTCGCCGTCGCTCGCGGGCTGACCAACACCGAGATCGCCGATGCACTGCACATCAGCCTCAGCACGGT
GAAGACGCATCTGGCCAGCCTGATGGCCAAACTCGGCGCCCGCAACCGGGTCGAGATCGCGATGTGGGCCTACGAAACGC
GCCGTATCCTCCCCGGAACCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.037

98.182

0.364