Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LVJ77_RS07785 Genome accession   NZ_CP091521
Coordinates   1586871..1588253 (+) Length   460 a.a.
NCBI ID   WP_027009165.1    Uniprot ID   -
Organism   Conchiformibius kuhniae strain 17694     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1581871..1593253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ77_RS07775 (LVJ77_06960) - 1584121..1585287 (-) 1167 WP_027009163.1 nitronate monooxygenase family protein -
  LVJ77_RS07780 (LVJ77_06955) hemA 1585456..1586727 (-) 1272 WP_027009164.1 glutamyl-tRNA reductase -
  LVJ77_RS07785 (LVJ77_06950) radA 1586871..1588253 (+) 1383 WP_027009165.1 DNA repair protein RadA Machinery gene
  LVJ77_RS07790 (LVJ77_06945) - 1588250..1588531 (+) 282 WP_027009166.1 hypothetical protein -
  LVJ77_RS07795 (LVJ77_06940) - 1589141..1589596 (+) 456 WP_376986218.1 hypothetical protein -
  LVJ77_RS07800 (LVJ77_06935) rsfS 1589988..1590374 (-) 387 WP_027009168.1 ribosome silencing factor -
  LVJ77_RS07805 (LVJ77_06930) fmt 1590427..1591368 (-) 942 WP_027009169.1 methionyl-tRNA formyltransferase -
  LVJ77_RS07810 (LVJ77_06925) - 1591381..1591959 (-) 579 WP_027009170.1 GNAT family N-acetyltransferase -
  LVJ77_RS07815 (LVJ77_12510) - 1592309..1593223 (+) 915 WP_027009171.1 hypothetical protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49205.60 Da        Isoelectric Point: 7.3939

>NTDB_id=652042 LVJ77_RS07785 WP_027009165.1 1586871..1588253(+) (radA) [Conchiformibius kuhniae strain 17694]
MAKAPKTVYQCTECGGNAPKWQGKCPHCGEWNTLQESLAAPEPKNPRFQSWAAETAQVQPLAQVSAAEVPRQPTGIGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTLASAAARRKVLYVSGEESAQQVALRAQRLGVRAQGVDLLAEIRLEAVQAA
LKQHRPEIVVIDSIQTVYSDLITSAPGSVSQVRECAAQLTRTAKQMGIAVILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNHRMIRAIKNRFGAANELGVFAMTEQGLKGVSNPSAIFLASYRDDVSGSCVLVTQEGTRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHAGIACFDRDVFLNAVGGVKIGEPAADLAVILAMLSSYRDQPLPQKMVAFGEVGLGGE
IRPVPRGQERLKEAEKLGFKRAIVPKANLPRQAAEFPNLKLHGVTSLAEAVDLCRNGDEE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=652042 LVJ77_RS07785 WP_027009165.1 1586871..1588253(+) (radA) [Conchiformibius kuhniae strain 17694]
ATGGCAAAAGCCCCGAAAACCGTTTACCAATGCACAGAATGCGGCGGCAACGCCCCCAAATGGCAAGGCAAATGCCCGCA
TTGCGGCGAATGGAACACCTTGCAGGAAAGCCTCGCCGCGCCCGAACCGAAAAACCCGCGCTTCCAATCGTGGGCGGCGG
AAACCGCGCAGGTGCAGCCTTTGGCGCAGGTGAGCGCGGCGGAAGTGCCGCGCCAGCCCACCGGCATCGGCGAGCTCGAC
CGCGTACTCGGCGGCGGTTTGGTGGACGGCGCGGTGATTTTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACCCTGCT
TTTGCAAACTTTGGCATCGGCGGCGGCGCGGCGCAAAGTGCTGTATGTGTCGGGCGAGGAATCGGCGCAACAAGTTGCTT
TGCGGGCGCAACGTTTGGGCGTGCGGGCGCAGGGCGTGGATTTGTTGGCGGAAATCCGTTTGGAAGCGGTTCAGGCAGCC
TTGAAACAACACCGTCCCGAAATCGTCGTCATCGATTCCATTCAAACCGTGTATTCCGATTTAATCACTTCCGCGCCCGG
CTCGGTGTCGCAAGTGCGCGAGTGCGCCGCGCAGCTCACCCGCACCGCCAAACAAATGGGCATCGCCGTGATTTTGGTCG
GACACGTTACCAAAGACGGTGCGATTGCCGGCCCGCGCGTGTTGGAACACATGGTGGACACCGTTTTGTATTTTGAAGGC
GACCAACACTCCAACCACCGCATGATACGCGCCATCAAAAACCGTTTCGGCGCCGCCAACGAATTGGGCGTGTTCGCCAT
GACCGAACAAGGCTTGAAAGGCGTGTCCAATCCGTCCGCGATTTTTTTGGCGAGTTACCGCGACGACGTTTCCGGCTCGT
GCGTGTTGGTTACGCAGGAAGGCACGCGCCCGCTTTTGGTGGAAATTCAGGCATTGGTGGACGATGCGCACGGTTTCACG
CCGAAACGGCTCACGGTGGGCTTGGAACAAAACCGTTTGGCGATGCTGCTGGCGGTGCTGAACCGTCATGCGGGAATTGC
CTGTTTTGACCGCGACGTATTTTTAAACGCGGTGGGCGGCGTGAAAATCGGCGAACCGGCGGCGGATTTGGCGGTGATTT
TGGCGATGCTGTCCAGCTACCGCGACCAACCCTTGCCGCAAAAAATGGTGGCGTTCGGCGAAGTGGGCTTGGGCGGCGAA
ATCCGTCCCGTGCCGCGCGGACAGGAACGCCTGAAAGAAGCGGAAAAACTGGGCTTCAAACGCGCCATCGTGCCGAAAGC
CAATCTGCCGCGCCAAGCGGCGGAGTTTCCAAATTTGAAACTGCACGGGGTAACGAGTTTGGCGGAAGCGGTGGACTTGT
GCCGCAACGGAGATGAGGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(77-220)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.339

98.696

0.487
  radA Streptococcus pneumoniae Rx1

48.23

98.261

0.474
  radA Streptococcus pneumoniae D39

48.23

98.261

0.474
  radA Streptococcus pneumoniae TIGR4

48.23

98.261

0.474
  radA Streptococcus pneumoniae R6

48.23

98.261

0.474
  radA Streptococcus mitis NCTC 12261

47.588

99.13

0.472
  radA Streptococcus mitis SK321

48.115

98.043

0.472