Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   OG985_RS31260 Genome accession   NZ_CP108046
Coordinates   6903375..6905108 (-) Length   577 a.a.
NCBI ID   WP_371671688.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00289     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 6898375..6910108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG985_RS31250 (OG985_31145) - 6900047..6901396 (+) 1350 WP_371671686.1 RNA polymerase sigma factor -
  OG985_RS31255 (OG985_31150) rcrQ 6901447..6903375 (-) 1929 WP_371671687.1 ABC transporter ATP-binding protein Regulator
  OG985_RS31260 (OG985_31155) rcrP 6903375..6905108 (-) 1734 WP_371671688.1 ABC transporter ATP-binding protein Regulator
  OG985_RS31265 (OG985_31160) - 6905390..6906844 (-) 1455 WP_371671689.1 FGGY-family carbohydrate kinase -
  OG985_RS31270 (OG985_31165) - 6907064..6907369 (-) 306 WP_371671690.1 YtxH domain-containing protein -

Sequence


Protein


Download         Length: 577 a.a.        Molecular weight: 62506.71 Da        Isoelectric Point: 6.6174

>NTDB_id=652027 OG985_RS31260 WP_371671688.1 6903375..6905108(-) (rcrP) [Streptomyces sp. NBC_00289]
MLIRLLRTYLRPYRKPIVLLVLLQFLQTCATLYLPTLNAHIIDSGVVKGDTGYILSFGALMIGISMAQVVCNIGAVYYGA
RTASAVGRDLRAAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIILALGLDVPLSGV
LVAVVPVLGISVTLIVRRLRPLFRSMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFRKSNAELTDVALGTGRLLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGQMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLDTSSSVVP
PAAPVRELRRHGHLELRGAGFRYPGAEEPVLKGVDLVALPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGESVA
GIDPKLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDAPIAQGGSNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSRETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=652027 OG985_RS31260 WP_371671688.1 6903375..6905108(-) (rcrP) [Streptomyces sp. NBC_00289]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAGGAAACCCATCGTCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTATCTGCCCACGCTCAACGCGCACATCATCGACAGTGGTGTCGTCAAGGGAGACACCGGCTACA
TCCTCTCGTTCGGCGCCCTGATGATCGGCATCTCGATGGCGCAGGTCGTCTGCAACATCGGTGCCGTGTACTACGGCGCA
CGGACCGCCTCGGCGGTGGGCCGGGACCTGCGGGCCGCCGTCTTCGACCGCGTGCAGTCCTTCTCGGCGCGCGAAGTCGG
CCAGTTCGGTGCGCCCTCGCTGATCACCCGGACCACGAACGACGTCCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CCCTTCTGGTGTCCGCGCCGATCATGTGTGTGGGCGGCATCATCCTGGCCCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGGTCGCGGTCGTGCCGGTGCTCGGCATCTCCGTGACACTGATCGTGCGCCGGCTGCGCCCGCTGTTCCGGTCCATGCA
GGTGCGTCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCGTTCGTCCGGGACG
ACTACGAGAAGGACCGTTTCCGGAAGTCCAACGCGGAACTGACCGATGTGGCGCTGGGCACCGGCAGGCTGCTGGCGCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCGATCGCCGTGGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CCAGATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAACGGGTCCAGGAGGTGCTCGACACCTCGTCCAGCGTGGTTCCG
CCGGCCGCCCCCGTACGGGAGCTGCGCCGGCACGGCCATCTGGAGCTGCGCGGGGCCGGTTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTGAAGGGCGTCGACCTGGTGGCCCTGCCGGGCGAGACCACGGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCCACCCTGCTGGGCCTGGTGCCCAGGCTGTTCGACGCCACCGACGGCGAGGTGCTGGTCGACGGGGAGAGCGTGGCG
GGCATCGACCCGAAGCTGCTGGCGAAGACGGTCGGCCTGGTGCCGCAGAAGCCGTACCTGTTCGCGGGTACGGTCGCCAC
CAACCTGCGGTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCGAGGGGCTGGAGAACGGGCTCGACGCCCCGATCGCGCAGGGCGGGAGCAATGTCTCCGGCGGTCAGCGCCAGCGGCTG
GCCATCGCCCGTACGCTCGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCCCTGCGGGCGGCGCTGTCCCGGGAGACCGCCGAGGCGACCGTCGTCATCGTCGCGCAGCGCGTGGCGACCATCC
GGGACGCCGACCGGATCGTCGTCCTGGACGAGGGCCGGGTCGTCGGCACCGGCCGGCACCACGAGCTCATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.071

100

0.393