Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   LVJ80_RS14010 Genome accession   NZ_CP091519
Coordinates   2731863..2733548 (-) Length   561 a.a.
NCBI ID   WP_034290951.1    Uniprot ID   A0A376BV97
Organism   Alysiella crassa strain S6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2726863..2738548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ80_RS13990 (LVJ80_10725) rlmN 2727547..2728638 (+) 1092 WP_034290942.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  LVJ80_RS13995 (LVJ80_10720) pilW 2728638..2729486 (+) 849 WP_034290945.1 type IV pilus biogenesis/stability protein PilW -
  LVJ80_RS14000 (LVJ80_10715) - 2729507..2730412 (+) 906 WP_084693432.1 helix-turn-helix domain-containing protein -
  LVJ80_RS14005 (LVJ80_10710) ispG 2730539..2731804 (+) 1266 WP_034290948.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  LVJ80_RS14010 (LVJ80_10705) recD 2731863..2733548 (-) 1686 WP_034290951.1 exodeoxyribonuclease V subunit alpha Machinery gene
  LVJ80_RS14015 (LVJ80_10695) - 2733819..2734382 (-) 564 WP_034290954.1 YceI family protein -
  LVJ80_RS14020 (LVJ80_10690) recR 2734540..2735145 (+) 606 WP_034290957.1 recombination mediator RecR -
  LVJ80_RS14025 (LVJ80_10685) - 2735401..2736084 (+) 684 WP_034290960.1 amino acid ABC transporter permease -
  LVJ80_RS14030 (LVJ80_10680) - 2736098..2736844 (+) 747 WP_034290963.1 amino acid ABC transporter ATP-binding protein -
  LVJ80_RS14035 (LVJ80_10675) - 2737204..2738241 (+) 1038 WP_051968373.1 histone deacetylase family protein -

Sequence

Protein


Download         Length: 561 a.a.        Molecular weight: 61873.45 Da        Isoelectric Point: 6.7631

>NTDB_id=652022 LVJ80_RS14010 WP_034290951.1 2731863..2733548(-) (recD) [Alysiella crassa strain S6]
MTELPYSPAEQVLALFAEYAPDSVDTLAPIIHRLFNALADGHTFIYVNKDDAAQLSALNPIVGKENTPLVLQGQRLFLGR
MFQLEYDLAQEIKRLSTPIHALPDVAHTRSQLQNLFPDTSSRDQQAAAALALWQNFTVISGGPGTGKTTTVAKLLVLLSG
DRQPRIALAAPTGKAAARMSEALKNALARINTQPEHAFLAQLDGQTVHRLLGLKPPQMQPEYHAQHRLPLDIVVIDEASM
LDAYLLLQLLQALPDHCRVILLGDEHQLPSVNAGAVLAALVHSAFRLPEDSPIHEILSSHQLDNLIPPVARLSISHRFGA
DSGIGCLARSVVQGDALAAWAQFSQFPNELIAKQKSTEQQAKELYAQHTNYWQAVDNQDVAAAFRHQSDVVVLAARRADA
ALFNEHYRKVLQKHGRIISSDTLWYAGQMLMMTRNDPATRLFNGDIGIVLAHGNGLAAWFPDTGNTFRAVPLSRLPAHEP
AFAMTVHKSQGSEYGEVWLLPPTSHDDNEAEQGFSRALLYTAITRAKQKFVYWGDVASFQAACENREMRRTALSEFLLKN
H

Nucleotide


Download         Length: 1686 bp        

>NTDB_id=652022 LVJ80_RS14010 WP_034290951.1 2731863..2733548(-) (recD) [Alysiella crassa strain S6]
ATGACTGAATTACCCTATTCTCCTGCTGAACAGGTGTTGGCATTATTTGCCGAATACGCGCCCGATTCTGTGGACACGCT
TGCGCCGATTATTCACCGTTTATTCAATGCGTTGGCAGATGGGCATACGTTTATTTATGTGAACAAAGATGACGCCGCCC
AACTGTCCGCCCTAAACCCCATAGTTGGCAAAGAAAACACGCCTTTGGTTTTACAAGGGCAACGCTTATTTTTGGGCAGA
ATGTTTCAATTGGAATACGATTTAGCTCAAGAAATCAAACGATTATCTACACCCATCCACGCATTGCCCGATGTCGCACA
CACGCGTTCACAATTGCAAAATCTGTTCCCCGACACCAGCAGCCGCGACCAACAAGCCGCCGCCGCGTTGGCTTTGTGGC
AAAATTTTACCGTCATTAGCGGCGGGCCGGGAACGGGCAAAACCACGACTGTGGCGAAATTGCTGGTGTTGTTGAGTGGC
GACCGTCAGCCGCGCATTGCGCTTGCCGCACCTACAGGTAAGGCGGCGGCGCGGATGTCGGAAGCACTCAAAAACGCGTT
GGCACGGATTAACACGCAGCCTGAACACGCCTTTTTGGCACAATTAGATGGGCAAACCGTACACCGCTTGCTGGGGCTAA
AACCACCACAAATGCAGCCTGAATACCACGCACAACACCGTTTGCCTTTGGATATTGTCGTGATTGACGAAGCGTCTATG
TTGGACGCGTATTTATTGCTGCAATTATTGCAAGCCCTGCCCGACCATTGCCGCGTGATTTTGTTGGGCGATGAACATCA
ATTGCCATCGGTGAATGCGGGGGCGGTGTTGGCGGCATTGGTTCACAGCGCGTTCAGGCTGCCTGAAGATTCGCCGATTC
ATGAAATTTTATCGTCTCATCAATTGGATAACTTAATTCCGCCCGTTGCCCGATTGAGCATTAGCCATCGTTTTGGGGCG
GACAGCGGCATTGGTTGCTTGGCGCGTAGCGTGGTGCAGGGAGACGCGTTGGCGGCGTGGGCGCAATTTAGCCAATTTCC
CAACGAATTGATTGCCAAACAAAAATCTACCGAACAACAAGCCAAAGAATTGTACGCCCAACACACCAACTATTGGCAAG
CGGTGGACAATCAAGATGTTGCCGCCGCTTTTCGCCACCAAAGCGATGTGGTGGTGTTGGCGGCGCGGCGAGCGGACGCG
GCTTTATTCAATGAACACTACCGAAAAGTTTTGCAAAAACATGGGCGTATCATCAGCAGCGACACGCTGTGGTATGCGGG
GCAAATGCTGATGATGACGCGTAACGACCCTGCCACGCGCTTGTTTAATGGCGATATTGGCATAGTTTTGGCGCACGGCA
ATGGTTTAGCGGCGTGGTTTCCCGATACGGGCAACACGTTTCGCGCCGTGCCATTGAGCCGTTTGCCTGCCCACGAGCCA
GCGTTTGCGATGACCGTACATAAAAGCCAGGGTTCGGAATACGGCGAAGTGTGGTTACTGCCGCCCACATCTCACGATGA
TAATGAAGCAGAACAAGGATTTAGCCGCGCCCTACTCTATACCGCGATTACACGCGCCAAGCAGAAATTTGTTTATTGGG
GCGATGTGGCAAGTTTTCAGGCTGCCTGCGAAAATCGGGAAATGCGGCGCACGGCATTAAGTGAATTTTTATTAAAAAAT
CATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(121-283)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(480-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A376BV97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

49.64

99.109

0.492