Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   LVJ80_RS13815 Genome accession   NZ_CP091519
Coordinates   2687282..2690905 (-) Length   1207 a.a.
NCBI ID   WP_034292466.1    Uniprot ID   A0A376BVD9
Organism   Alysiella crassa strain S6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2682282..2695905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ80_RS13790 (LVJ80_10935) argH 2682760..2684139 (+) 1380 WP_034292459.1 argininosuccinate lyase -
  LVJ80_RS13795 (LVJ80_10930) - 2684363..2684953 (+) 591 WP_084693526.1 CAP domain-containing protein -
  LVJ80_RS13800 (LVJ80_10925) - 2685110..2685550 (+) 441 WP_051968487.1 TIGR01244 family sulfur transferase -
  LVJ80_RS13805 (LVJ80_10920) - 2685823..2686065 (-) 243 WP_115723704.1 NF038104 family lipoprotein -
  LVJ80_RS13810 (LVJ80_10915) dapE 2686078..2687214 (-) 1137 WP_034292463.1 succinyl-diaminopimelate desuccinylase -
  LVJ80_RS13815 (LVJ80_10910) recB 2687282..2690905 (-) 3624 WP_034292466.1 exodeoxyribonuclease V subunit beta Machinery gene
  LVJ80_RS13820 (LVJ80_10905) - 2691039..2692121 (-) 1083 WP_115723684.1 IS4 family transposase -
  LVJ80_RS13825 (LVJ80_10900) trpD 2692253..2693278 (+) 1026 WP_034293360.1 anthranilate phosphoribosyltransferase -
  LVJ80_RS13830 (LVJ80_10895) lon 2693352..2695784 (-) 2433 WP_034293363.1 endopeptidase La -

Sequence

Protein


Download         Length: 1207 a.a.        Molecular weight: 137184.79 Da        Isoelectric Point: 6.1141

>NTDB_id=652020 LVJ80_RS13815 WP_034292466.1 2687282..2690905(-) (recB) [Alysiella crassa strain S6]
MFQPLNPLTVPIAHTNLIEASAGTGKTWNIAALFTRLIVLEHYRVDKILVVTFTKAATAELKTRLRARLDEALAILKKTP
HAAENLDLLEQNCWINGKFEPFRFKLLQQALNQESQARLELRLKAAISEFDNAAIYTIHGFCQRVLQDFAFLCQVPFDIQ
LDEQSADNQYLTAAQDFWRTQVAPNPQLAALVYRYKLTPQNQLAALKSFLSRPYLPFRQPESTAPYTELWANFQAAWQGI
SQKIQAIETAFWTIHPDLNGNSYRTDTFRNKFTELLGQPENPNPLILQKILYNSDMSYQPFSAECLQTKVKKGKTPNPKA
VAQISELNELTQIVDELIAAEQALLHELARNFTAYLRTQRRELKKHSPQRVFDDLLLDVHAALMENHEYSQTLAHSLAQN
WQVALIDEFQDTDPLQYAIFRTAFADTNTPLFLVGDPKQAIYSFRGADIFAYLQAVKDSQQHYTLDTNRRSHRLLINSIG
KFFERNQPFALPEIDYVKVNASRDAPDLSPAGRAVQVRWLPNADGLNTDGLVRESAAICAAQIADLLAQSFSGSLKFKDQ
PLHAGQIAVLVRARKDGAIMQRELKKRNIQSVLLSRESVFAEAEALAVAALLEFMIQPQKTGLLRFVLSGCLFEYDSAAL
HDLNLNENKLLAWIDSANKAHEIWLQDGIYAALQAFFAQHGVETRLLTQNQERTLTNLHQIMELLAQEDELSHTPTSLLQ
WLNREIQAASKQKNSHDHHILRLESDEQLVKIVTMHAAKGLQYPIVFCPFLWKASEVSTRTDWHISHERGFAEIISKTQY
KQSDDDRENIKLAHLSEDLRLLYVALTRAEERLYLYVSHFQTSEKSDKSNKNQEDNLDLKYKNALAYLLNADEKLSKNAT
AYEAHWREFLANQTLDETDIEFVVHDDLAFSGSLQTENPPPKPIFHATEFAPRRFQFVQHASFTSLSRQTERAAAELSPM
VDADELTMVAPTAPPPDGDSIHAFPQGAAAGVCLHSVLEKLHFRQPASEQIDLIDEKLIYHGFDPEIWREAVVQMCDFAR
ETPLLPRVNLAALNQRNTLSEMNFLLHTDDFRLADIQAWLAAQDLPDEIIQATRHLAFRDVRGYLNGAIDLVAQFQGKTL
ILDYKSNYLGNSAAAYTPNAMDAAMAEHHYYLQALIYAIAVARYLQSRGVLPEMLSVRYLFLRGLDGISDNGVWAWDIRT
ADLARWL

Nucleotide


Download         Length: 3624 bp        

>NTDB_id=652020 LVJ80_RS13815 WP_034292466.1 2687282..2690905(-) (recB) [Alysiella crassa strain S6]
ATGTTTCAGCCACTCAATCCGCTTACCGTTCCCATTGCCCACACCAATTTAATTGAAGCGTCCGCAGGCACGGGCAAAAC
GTGGAACATTGCCGCCCTATTCACCCGCCTGATTGTGCTGGAACACTACCGCGTGGACAAAATTTTGGTGGTAACCTTTA
CCAAAGCCGCCACCGCCGAATTGAAAACCCGTTTACGCGCCCGCTTGGACGAAGCCCTAGCCATACTCAAAAAAACGCCC
CATGCTGCCGAAAATTTGGATTTATTGGAACAAAATTGCTGGATAAATGGCAAATTTGAACCATTCCGCTTTAAGTTGCT
GCAACAAGCCCTAAACCAAGAAAGCCAAGCCCGACTGGAATTGCGCCTAAAAGCCGCCATCAGCGAATTTGACAATGCCG
CCATTTACACCATACACGGTTTTTGCCAACGCGTATTGCAGGATTTTGCCTTTTTGTGCCAAGTGCCATTTGATATTCAA
TTAGACGAACAATCAGCAGATAATCAATACCTTACCGCCGCGCAAGATTTTTGGCGCACCCAAGTCGCGCCCAATCCGCA
ACTTGCCGCACTGGTGTATCGCTACAAATTAACGCCGCAAAATCAATTGGCTGCACTGAAATCATTTTTATCGCGCCCCT
ATTTACCGTTCAGGCAGCCTGAAAGTACCGCGCCTTATACTGAATTGTGGGCGAATTTTCAGGCAGCGTGGCAAGGTATT
TCCCAAAAAATTCAAGCAATTGAAACCGCATTTTGGACTATCCACCCCGATTTAAACGGCAACAGTTACCGCACCGACAC
ATTTCGCAATAAATTTACCGAATTACTCGGGCAGCCTGAAAATCCCAATCCATTGATTTTACAAAAAATTTTATACAATA
GCGACATGAGCTATCAGCCATTTTCCGCCGAATGTTTGCAAACCAAAGTGAAAAAAGGCAAAACCCCCAATCCAAAAGCA
GTCGCCCAAATCAGCGAATTAAACGAATTAACCCAAATCGTTGATGAATTAATTGCCGCAGAACAAGCCTTATTACACGA
ATTGGCGCGCAATTTTACCGCCTATTTACGCACACAACGCCGCGAATTGAAAAAACACAGCCCACAGCGCGTGTTTGACG
ATTTATTGTTAGACGTGCATGCGGCATTAATGGAAAATCATGAATATTCTCAAACACTTGCCCACTCACTCGCGCAAAAC
TGGCAAGTCGCGCTGATTGACGAATTTCAAGACACCGACCCTTTGCAATACGCCATTTTCCGCACCGCTTTTGCTGACAC
GAATACGCCGCTTTTTTTGGTGGGCGACCCAAAACAGGCGATTTACAGTTTTCGTGGCGCGGATATTTTCGCGTATTTAC
AAGCAGTTAAGGATAGCCAACAGCATTATACTTTGGACACCAATCGGCGCAGTCATCGTTTACTGATTAACAGCATAGGA
AAATTTTTTGAACGAAATCAACCCTTTGCCTTGCCAGAAATTGATTATGTGAAGGTGAATGCCAGCCGCGATGCGCCCGA
TTTGTCGCCCGCAGGTCGGGCTGTGCAGGTGCGTTGGTTGCCCAATGCCGATGGGCTGAATACCGATGGTTTGGTGCGCG
AATCGGCGGCGATTTGTGCGGCACAAATTGCTGATTTATTGGCGCAATCTTTTTCAGGCAGCCTGAAATTTAAAGACCAG
CCACTCCACGCAGGGCAAATTGCCGTCTTGGTTCGCGCCCGAAAAGATGGCGCAATCATGCAGCGCGAATTGAAAAAACG
CAATATTCAGAGTGTGTTATTGAGCCGCGAAAGCGTGTTTGCCGAAGCGGAAGCCTTGGCGGTGGCTGCTTTGCTGGAAT
TTATGATACAGCCGCAGAAAACGGGTTTGCTGCGTTTTGTGCTTTCAGGCTGCCTGTTTGAATACGATTCGGCGGCGTTG
CACGATTTAAATTTAAATGAAAACAAATTATTAGCATGGATAGACAGCGCAAACAAAGCGCACGAGATTTGGTTGCAAGA
CGGTATTTACGCGGCATTGCAGGCGTTTTTCGCGCAACACGGCGTGGAAACGCGTTTATTGACGCAAAATCAGGAGCGTA
CACTCACTAATTTACATCAAATCATGGAGTTACTCGCGCAGGAAGACGAATTGAGCCACACGCCCACGTCCTTATTGCAA
TGGCTGAATCGGGAAATTCAGGCTGCCAGCAAACAGAAAAATAGCCACGACCACCATATTTTGCGGCTGGAAAGCGATGA
ACAATTGGTGAAAATTGTTACCATGCACGCGGCGAAAGGTTTGCAGTATCCCATTGTTTTTTGTCCCTTTTTGTGGAAAG
CGAGCGAAGTCAGTACGCGTACCGATTGGCACATCAGCCATGAACGCGGTTTTGCGGAAATCATCAGCAAAACGCAATAT
AAACAAAGTGATGACGACAGGGAAAATATTAAACTCGCGCATTTATCGGAAGATTTGCGTTTGCTGTATGTGGCTTTGAC
ACGGGCGGAAGAGCGTTTGTATTTATACGTTTCGCATTTCCAAACTTCAGAAAAATCAGATAAATCCAATAAAAATCAGG
AAGATAATTTGGATTTAAAATACAAAAACGCGCTGGCTTATTTATTAAACGCAGACGAAAAATTAAGCAAAAACGCCACC
GCCTACGAAGCCCATTGGCGCGAATTTCTGGCAAATCAAACGCTTGACGAAACGGATATTGAATTTGTGGTACACGATGA
TTTGGCGTTTTCAGGCAGCCTGCAAACGGAAAATCCGCCGCCCAAGCCGATTTTTCACGCCACCGAATTTGCGCCGCGCC
GCTTCCAATTTGTGCAACACGCCAGTTTTACCAGCTTGAGCCGCCAAACGGAACGCGCCGCCGCCGAATTGTCGCCGATG
GTGGACGCGGACGAATTGACAATGGTCGCACCCACCGCGCCGCCGCCCGATGGCGACAGCATACACGCCTTTCCGCAGGG
CGCGGCGGCGGGGGTGTGTTTGCACAGCGTGTTGGAAAAATTGCATTTCAGGCAGCCTGCAAGTGAACAAATTGATTTAA
TTGATGAAAAATTGATTTATCATGGTTTTGACCCCGAAATCTGGCGTGAAGCGGTGGTGCAAATGTGCGATTTTGCGCGG
GAAACGCCTTTGTTGCCGCGCGTGAATTTGGCGGCATTGAATCAGCGCAACACATTGTCGGAAATGAATTTTTTATTGCA
TACCGATGATTTTCGTTTGGCGGACATTCAGGCGTGGTTGGCGGCGCAGGATTTGCCTGATGAAATCATTCAGGCAACAC
GCCATTTGGCGTTTCGTGATGTGCGCGGTTATTTGAATGGTGCGATTGATTTGGTGGCACAATTTCAAGGTAAAACTTTG
ATTTTAGATTATAAATCCAATTATTTGGGCAATTCAGCCGCCGCCTACACCCCCAATGCGATGGACGCGGCGATGGCGGA
ACATCATTATTATTTACAAGCATTGATTTATGCGATTGCGGTGGCGCGTTATTTGCAATCGCGTGGGGTGTTGCCTGAAA
TGCTGTCGGTGCGTTATTTGTTTTTGCGTGGGCTGGACGGTATTTCGGACAATGGCGTGTGGGCGTGGGATATTCGTACG
GCGGATTTGGCGCGGTGGTTGTGA

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(12-458)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(989-1193)

UvrD-like helicase C-terminal domain (UvrD_C)

(463-836)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A376BVD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

46.737

100

0.481