Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LVJ80_RS02300 Genome accession   NZ_CP091519
Coordinates   448373..448834 (+) Length   153 a.a.
NCBI ID   WP_034296296.1    Uniprot ID   A0A376BU07
Organism   Alysiella crassa strain S6     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 443373..453834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ80_RS02290 (LVJ80_08020) - 444507..446681 (+) 2175 WP_034296302.1 type I secretion system permease/ATPase -
  LVJ80_RS02295 (LVJ80_08015) - 446875..448104 (+) 1230 WP_034296299.1 HlyD family type I secretion periplasmic adaptor subunit -
  LVJ80_RS02300 (LVJ80_08010) recX 448373..448834 (+) 462 WP_034296296.1 recombination regulator RecX Regulator
  LVJ80_RS02305 (LVJ80_08005) waaF 448891..449889 (+) 999 WP_034296293.1 lipopolysaccharide heptosyltransferase II -
  LVJ80_RS02310 (LVJ80_08000) - 449861..450001 (-) 141 WP_244772872.1 hypothetical protein -
  LVJ80_RS02315 (LVJ80_07995) - 450031..450657 (+) 627 WP_034296290.1 HI_0552 family protein -
  LVJ80_RS02320 (LVJ80_07990) - 451069..451983 (-) 915 WP_034296287.1 lysine exporter LysO family protein -
  LVJ80_RS02325 (LVJ80_07985) - 452102..452491 (+) 390 WP_034296509.1 hypothetical protein -
  LVJ80_RS02330 (LVJ80_07980) - 452692..453168 (-) 477 WP_034296284.1 hypothetical protein -
  LVJ80_RS02335 (LVJ80_07975) rfaE2 453213..453701 (-) 489 WP_034296280.1 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17766.00 Da        Isoelectric Point: 8.0361

>NTDB_id=652003 LVJ80_RS02300 WP_034296296.1 448373..448834(+) (recX) [Alysiella crassa strain S6]
MSRPEKSLRSRALEHLSRREMSKLELKRKLAPYAESEDEIDAVLTEFADLNWQSDERYAEAFINSKSRKHGRVRLKQALT
QKGVDAATIAEYLPDSETDFAHACEVLRKKFRQPASEAAEKQKQMRFLLYRGFTADVAQKAMRRAWDDNDDDV

Nucleotide


Download         Length: 462 bp        

>NTDB_id=652003 LVJ80_RS02300 WP_034296296.1 448373..448834(+) (recX) [Alysiella crassa strain S6]
ATGTCTCGCCCCGAAAAATCCCTACGCAGCCGCGCTTTAGAACACCTATCGCGCCGCGAAATGAGCAAATTAGAATTAAA
ACGCAAACTCGCCCCCTACGCCGAAAGCGAAGACGAAATCGACGCGGTACTCACCGAATTTGCCGATTTAAATTGGCAAT
CAGACGAGCGTTACGCCGAAGCCTTTATCAACAGCAAATCGCGTAAACACGGTCGCGTGCGCCTAAAACAAGCCTTAACG
CAAAAAGGCGTGGACGCGGCAACCATCGCCGAATATTTGCCCGACAGCGAAACCGATTTCGCCCACGCCTGCGAAGTGTT
ACGCAAAAAATTCAGGCAGCCTGCAAGCGAAGCCGCCGAAAAACAAAAACAAATGCGTTTTTTGCTGTATCGCGGTTTCA
CCGCAGATGTGGCGCAAAAAGCCATGCGTCGCGCGTGGGACGATAATGATGATGACGTTTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(36-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A376BU07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

60

98.039

0.588