Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LVJ79_RS04070 Genome accession   NZ_CP091518
Coordinates   751587..752117 (+) Length   176 a.a.
NCBI ID   WP_003785826.1    Uniprot ID   A0AAX2J3W4
Organism   Kingella kingae strain 4177/66     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 746587..757117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ79_RS04050 (LVJ79_04050) - 746652..749021 (-) 2370 WP_003785821.1 penicillin-binding protein 1A -
  LVJ79_RS04055 (LVJ79_04055) pilM 749163..750266 (+) 1104 WP_003785822.1 type IV pilus biogenesis protein PilM -
  LVJ79_RS04060 (LVJ79_04060) - 750268..750927 (+) 660 WP_003785824.1 PilN domain-containing protein -
  LVJ79_RS04065 (LVJ79_04065) - 750930..751553 (+) 624 WP_003785825.1 type 4a pilus biogenesis protein PilO -
  LVJ79_RS04070 (LVJ79_04070) pilP 751587..752117 (+) 531 WP_003785826.1 pilus assembly protein PilP Machinery gene
  LVJ79_RS04075 (LVJ79_04075) pilQ 752151..754253 (+) 2103 WP_003785828.1 type IV pilus secretin PilQ Machinery gene
  LVJ79_RS04080 (LVJ79_04080) - 754310..754822 (+) 513 WP_111694434.1 shikimate kinase -
  LVJ79_RS04085 (LVJ79_04085) aroB 754822..755904 (+) 1083 WP_003785833.1 3-dehydroquinate synthase -
  LVJ79_RS04090 (LVJ79_04090) - 755923..756339 (+) 417 WP_003785834.1 ProQ/FINO family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19408.16 Da        Isoelectric Point: 5.2810

>NTDB_id=651978 LVJ79_RS04070 WP_003785826.1 751587..752117(+) (pilP) [Kingella kingae strain 4177/66]
MKVKLFLMSALVLAGCSEQYGDLQEWMSQARAEAKTKVRPVEPLAPIEPVTYFAPQITGPNAFNMQRMKAAFQNGNAPDL
NRSKELLENYSLENLRYVGSIGTPGSLSALIEIQVNGEPHVYTVKQGNYLGQNFGRISKITADKIDLVETVEDTYGNWVN
RPAELLPMTDAAATAK

Nucleotide


Download         Length: 531 bp        

>NTDB_id=651978 LVJ79_RS04070 WP_003785826.1 751587..752117(+) (pilP) [Kingella kingae strain 4177/66]
ATGAAAGTTAAATTATTTTTGATGTCAGCACTAGTGCTGGCAGGCTGTTCTGAACAGTATGGGGATTTGCAAGAGTGGAT
GAGTCAAGCAAGAGCAGAGGCAAAAACAAAAGTTCGCCCTGTTGAGCCTTTGGCACCGATTGAACCCGTTACTTATTTTG
CACCTCAAATTACAGGGCCGAATGCGTTTAATATGCAACGTATGAAAGCAGCTTTCCAAAATGGTAATGCGCCAGATTTG
AACCGAAGTAAAGAATTGCTAGAAAATTATAGCCTAGAGAATTTACGGTATGTTGGTTCAATTGGTACACCTGGTTCATT
ATCGGCTTTGATTGAAATCCAAGTAAATGGAGAGCCACACGTTTACACAGTGAAGCAAGGCAATTATTTGGGACAAAATT
TTGGTCGTATCTCTAAAATTACAGCGGATAAAATTGATTTGGTTGAAACTGTAGAAGATACGTATGGAAATTGGGTCAAT
CGACCAGCAGAGTTGCTGCCTATGACAGATGCAGCTGCTACTGCTAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

51.497

94.886

0.489