NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	LVJ84_RS09500	Genome accession	NZ_CP091516
Coordinates	1626161..1627546 (-)	Length	461 a.a.
NCBI ID	WP_115308656.1	Uniprot ID	A0A377R1Y7
Organism	Kingella potus strain 3/SID/1128
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1621161..1632546

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LVJ84_RS09475 (LVJ84_09475)	zupT	1621584..1622391 (+)	808	Protein_1889	zinc transporter ZupT	-
LVJ84_RS09480 (LVJ84_09480)	bfr	1622646..1623120 (-)	475	Protein_1890	bacterioferritin	-
LVJ84_RS09485 (LVJ84_09485)	bfr	1623152..1623616 (-)	465	WP_115308658.1	bacterioferritin	-
LVJ84_RS09490 (LVJ84_09490)	typA	1624005..1625823 (+)	1819	Protein_1892	translational GTPase TypA	-
LVJ84_RS09495 (LVJ84_09495)	-	1625973..1626164 (+)	192	WP_147286617.1	hypothetical protein	-
LVJ84_RS09500 (LVJ84_09500)	radA	1626161..1627546 (-)	1386	WP_115308656.1	DNA repair protein RadA	Machinery gene
LVJ84_RS09505 (LVJ84_09505)	-	1627557..1627922 (-)	366	WP_115308655.1	hypothetical protein	-
LVJ84_RS09510 (LVJ84_09510)	-	1627975..1628325 (-)	351	WP_115308654.1	hypothetical protein	-
LVJ84_RS09515 (LVJ84_09515)	gcvH	1628509..1628892 (+)	384	WP_115308653.1	glycine cleavage system protein GcvH	-
LVJ84_RS09520 (LVJ84_09520)	accB	1629157..1629611 (+)	455	Protein_1898	acetyl-CoA carboxylase biotin carboxyl carrier protein	-
LVJ84_RS09525 (LVJ84_09525)	-	1629734..1629926 (+)	193	Protein_1899	YqaE/Pmp3 family membrane protein	-
LVJ84_RS09530 (LVJ84_09530)	accC	1629976..1631343 (+)	1368	WP_244731421.1	acetyl-CoA carboxylase biotin carboxylase subunit	-
LVJ84_RS09535 (LVJ84_09535)	-	1631440..1631625 (+)	186	WP_147286616.1	hypothetical protein	-
LVJ84_RS09540 (LVJ84_09540)	-	1631629..1631814 (+)	186	WP_244731422.1	hypothetical protein	-
LVJ84_RS09545 (LVJ84_09545)	-	1631915..1632265 (+)	351	WP_244731423.1	hypothetical protein	-
LVJ84_RS09550 (LVJ84_09550)	-	1632276..1632428 (+)	153	WP_244731424.1	hypothetical protein	-

Sequence

Protein

Download Length: 461 a.a. Molecular weight: 49864.48 Da Isoelectric Point: 7.1548

                                >NTDB_id=651964 LVJ84_RS09500 WP_115308656.1 1626161..1627546(-) (radA) [Kingella potus strain 3/SID/1128]

MAKAPKTVYQCSECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAAESSQVQPLAHVTAQEVPRNPTGMGELD

RVLGGGLVDGAVILLGGDPGIGKSTLLLQTVAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA

LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG

DQHSNYRMIRAIKNRFGAVNELGVFAMTEHGLKGVSNPSAIFLASYRDDVAGSCVLVTQEGSRPLLVEIQALVDDAHGFA

PKRLTVGLEQNRLSMLLAVLNRHAGIACFDQDVFLNAVGGVKISEPAADLAVILAMLSSFRNKPLPEKMVAFGEIGLSGE

VRPVARGQERLKEAEKLGFKRAIVPKANLPRSKKEFPNLELYGVERLDKAVELCRDLAQSD

Nucleotide

Download Length: 1386 bp

                                >NTDB_id=651964 LVJ84_RS09500 WP_115308656.1 1626161..1627546(-) (radA) [Kingella potus strain 3/SID/1128]

ATGGCCAAAGCCCCGAAAACCGTTTACCAATGCAGCGAATGCGGCGGCACTTCGCCCAAATGGCAGGGCAAATGCCCGCA

TTGCGGCGAGTGGAACACCTTGCAGGAAAGCCTTGCTGCACCTGAGCCGAAAAACGCGCGTTTCCAGTCGTGGGCGGCGG

AAAGTTCGCAGGTGCAGCCGCTCGCGCACGTTACCGCGCAGGAAGTGCCGCGCAACCCTACCGGCATGGGCGAACTCGAC

CGCGTGTTGGGCGGCGGTTTGGTGGACGGCGCGGTGATTCTGCTTGGCGGCGATCCGGGCATCGGCAAATCGACGCTGCT

TTTGCAAACCGTGGCCAAAATGGCGCAGAGCCGCAAGGTTCTGTATGTGTCGGGCGAAGAATCGGCACAACAGGTTGCCT

TGCGCGCGCAGCGTTTGGAGCTGCCCACCGAGGGCGTGAACCTGCTGGCCGAAATCCGTATGGAAGCGATTCAGACGGCC

TTAAAACAGCATCAGCCGGAAGTTGTGGTTATCGACTCGATTCAGACCATGTATTCCGACCAGATTACCAGCGCGCCAGG

CAGCGTGTCGCAAGTGCGCGAGTGTGCCGCCCAGCTTACGCGCATGGCCAAACAGATGGGCATTGCCATGATTCTGGTCG

GCCACGTTACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGTTGGAGCATATGGTTGATACCGTTTTATATTTTGAGGGC

GACCAGCATTCCAACTACCGCATGATACGCGCCATCAAAAACCGCTTCGGCGCGGTCAACGAGTTGGGCGTATTCGCCAT

GACCGAACACGGCCTCAAAGGCGTGTCCAACCCTTCGGCGATTTTTCTGGCCAGCTACCGCGACGATGTGGCAGGCTCGT

GCGTCTTGGTAACGCAGGAAGGCAGCCGCCCGCTGCTGGTGGAAATCCAAGCCCTTGTGGACGACGCGCACGGCTTCGCA

CCCAAACGCCTTACCGTCGGCTTGGAGCAAAACCGCCTTTCCATGCTTTTGGCCGTACTCAACCGCCATGCCGGCATCGC

CTGCTTCGACCAAGACGTGTTTCTCAATGCGGTCGGCGGCGTAAAAATCAGCGAACCGGCGGCGGATTTGGCGGTGATTC

TCGCCATGCTCTCGAGCTTCCGCAACAAGCCTTTGCCAGAAAAAATGGTGGCTTTCGGCGAAATCGGCCTCAGCGGCGAA

GTACGCCCCGTCGCGCGCGGGCAGGAGCGGCTGAAAGAAGCGGAAAAACTCGGTTTCAAACGCGCCATCGTGCCCAAAGC

CAATTTACCGCGCAGCAAAAAAGAGTTTCCGAATCTGGAACTTTACGGCGTGGAGCGGCTGGATAAGGCGGTGGAACTGT

GCCGTGATTTGGCGCAAAGCGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(80-220)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A377R1Y7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.655	99.349	0.503
radA	Streptococcus mitis NCTC 12261	50.35	93.059	0.469
radA	Streptococcus pneumoniae Rx1	50.117	93.059	0.466
radA	Streptococcus pneumoniae D39	50.117	93.059	0.466
radA	Streptococcus pneumoniae R6	50.117	93.059	0.466
radA	Streptococcus pneumoniae TIGR4	50.117	93.059	0.466
radA	Streptococcus mitis SK321	50.117	93.059	0.466

Detailed information NTG0651964