Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   LVJ84_RS05790 Genome accession   NZ_CP091516
Coordinates   973419..974597 (+) Length   392 a.a.
NCBI ID   WP_244732878.1    Uniprot ID   -
Organism   Kingella potus strain 3/SID/1128     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 971348..972930 973419..974597 flank 489


Gene organization within MGE regions


Location: 971348..974597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ84_RS05775 (LVJ84_05775) - 971348..972001 (+) 654 WP_115307381.1 IS1595 family transposase -
  LVJ84_RS05780 (LVJ84_05780) - 971991..972443 (+) 453 WP_115307380.1 YDG/SRA domain-containing protein -
  LVJ84_RS05785 (LVJ84_05785) - 972763..972927 (+) 165 Protein_1146 IS1595 family transposase -
  LVJ84_RS05790 (LVJ84_05790) recD 973419..974597 (+) 1179 WP_244732878.1 AAA family ATPase Machinery gene

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 41763.21 Da        Isoelectric Point: 6.6493

>NTDB_id=651958 LVJ84_RS05790 WP_244732878.1 973419..974597(+) (recD) [Kingella potus strain 3/SID/1128]
MSDEFANAAAEAALELCQRLHLQAAEICAPFLPRLFAALADGHSFIWLSRDEAAALSQAAPLVESSGHAPLMLAGRRLFL
GRMWQLERDLAHEIRRLAAVPALIADPAAAAQNLQNWFAEPGSEGQQAATALALLQNFILISWRAGTGKTTTVAKLLALL
CTGADPVPRTALAAPTGKAAAHMGRALIAALQRFPLSDGLKASLSALEGQTVHRLLKLRPPQMRPQFDARHPLPLDILVI
DEASMIDLSLMLDLMHAVPDGCRVILLGDENQLPSVGAGAVLSALAQPAVLAPELAGRLNSLLPGAEQRFQTAENAPPLA
ANTARLTVSHRFGEHSGLGCLARAVCAGDAENAVAQFARFPDELSFIPDGTARLAERFCRMQAAYWQAYRCG

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=651958 LVJ84_RS05790 WP_244732878.1 973419..974597(+) (recD) [Kingella potus strain 3/SID/1128]
ATGTCCGACGAATTTGCTAATGCCGCTGCCGAAGCCGCGCTCGAACTCTGCCAACGCCTCCATCTCCAAGCCGCAGAAAT
CTGCGCCCCGTTCCTGCCGCGCCTTTTTGCCGCGCTTGCCGACGGCCACAGCTTTATCTGGCTTTCCCGCGACGAGGCTG
CTGCTTTGTCTCAAGCCGCTCCGCTGGTCGAAAGCAGCGGCCATGCGCCGCTGATGCTTGCCGGACGGCGGCTTTTTCTC
GGCAGGATGTGGCAGCTCGAACGCGATTTGGCGCACGAGATCCGCCGCCTCGCCGCCGTACCCGCCCTTATCGCCGATCC
CGCCGCAGCGGCGCAAAACCTGCAAAACTGGTTTGCCGAACCCGGCAGCGAAGGCCAGCAGGCCGCCACCGCCTTAGCCC
TGCTGCAAAACTTCATCCTGATTTCCTGGCGGGCGGGTACCGGCAAAACCACTACCGTGGCCAAACTCCTTGCCTTGCTG
TGTACCGGCGCAGATCCCGTGCCGCGCACCGCGCTGGCCGCGCCCACGGGTAAAGCCGCCGCCCATATGGGACGCGCCCT
TATCGCTGCTTTGCAGCGTTTCCCGCTTTCAGACGGCCTCAAAGCCAGTCTGTCCGCCCTTGAAGGCCAAACCGTGCACC
GTCTGCTCAAGCTGCGTCCGCCGCAGATGCGCCCTCAGTTTGACGCACGCCATCCGCTGCCGCTGGACATCCTTGTCATC
GACGAAGCCTCCATGATCGACCTGTCCCTGATGCTCGACCTGATGCACGCCGTACCCGACGGCTGCCGCGTGATTCTTTT
GGGCGACGAAAACCAGCTTCCCTCCGTTGGCGCGGGTGCGGTACTCTCAGCCCTCGCGCAGCCTGCCGTGCTTGCGCCCG
AACTTGCAGGCCGTCTGAACAGCCTGTTGCCCGGTGCGGAGCAGCGTTTTCAGACGGCTGAAAATGCGCCGCCGCTGGCT
GCCAATACCGCCCGCCTCACCGTCAGCCACCGTTTCGGCGAACATAGCGGCTTGGGCTGCCTTGCACGCGCCGTCTGTGC
AGGCGATGCGGAAAACGCGGTGGCGCAGTTTGCCCGTTTTCCCGACGAACTTTCCTTTATTCCCGACGGCACCGCGCGGC
TTGCAGAACGTTTCTGCCGTATGCAGGCCGCCTACTGGCAGGCGTACCGATGCGGGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(123-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

57.289

99.745

0.571