Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   LVJ84_RS04490 Genome accession   NZ_CP091516
Coordinates   744610..747813 (-) Length   1067 a.a.
NCBI ID   WP_342345874.1    Uniprot ID   -
Organism   Kingella potus strain 3/SID/1128     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 739610..752813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ84_RS04465 (LVJ84_04465) rph 740114..740844 (+) 731 Protein_891 ribonuclease PH -
  LVJ84_RS04470 (LVJ84_04470) - 741254..744028 (-) 2775 WP_244732545.1 FG-GAP-like repeat-containing protein -
  LVJ84_RS04475 (LVJ84_04475) - 744058..744243 (-) 186 WP_115307525.1 hypothetical protein -
  LVJ84_RS04480 (LVJ84_04480) - 744247..744393 (-) 147 WP_172461188.1 hypothetical protein -
  LVJ84_RS04485 (LVJ84_04485) - 744377..744613 (+) 237 WP_244732547.1 hypothetical protein -
  LVJ84_RS04490 (LVJ84_04490) recC 744610..747813 (-) 3204 WP_342345874.1 exodeoxyribonuclease V subunit gamma Machinery gene
  LVJ84_RS04495 (LVJ84_04495) tsaE 747986..748425 (+) 440 Protein_897 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  LVJ84_RS04500 (LVJ84_04500) - 748443..749728 (+) 1286 Protein_898 N-acetylmuramoyl-L-alanine amidase -
  LVJ84_RS04505 (LVJ84_04505) - 749801..750382 (+) 582 WP_244732550.1 hypothetical protein -
  LVJ84_RS04510 (LVJ84_04510) - 750470..750919 (+) 450 WP_115307520.1 YiiD C-terminal domain-containing protein -
  LVJ84_RS04515 (LVJ84_04515) - 750920..751522 (+) 603 WP_244732553.1 hypothetical protein -
  LVJ84_RS04520 (LVJ84_04520) - 751519..751977 (+) 459 WP_115308244.1 cytochrome c -

Sequence

Protein


Download         Length: 1067 a.a.        Molecular weight: 118388.74 Da        Isoelectric Point: 6.2691

>NTDB_id=651956 LVJ84_RS04490 WP_342345874.1 744610..747813(-) (recC) [Kingella potus strain 3/SID/1128]
MLRLYQSNRLEDLAALLQKVQESSPLSEPLLPEEIIVQSQGMRRFIGNYLAEHSGIAANIRFSLPAGFNWRLVRSLLPDI
PELSPFDTEVMRWRLLGLFVSDGLSSAGLAAAKAALSGYLSGGGAAAYQLAGQLADIFDQYLVYRPDWTDAWQRGRLLDL
GGDEAWQAELWRFLNDGQTAPHRVEMWHRLEKALESPPANALPERICVFGIAALAPMYLQLLQAVARHSEVHIFALNPSS
EYWGNIIDPAQILAEGGGTGLSAAGHPLLASLGKQGRDFFNALAESEAHTDLSVYHDHPLSDSLLHRLQYGLQTLAPPDK
TAALDDSIRIVSAHSPLRELEILKDHLLALFARDPDLQAHDTVVLTPDIEPYAPYIEAVFGRESGRPLPYSLADVKLSRR
RPLLHAVGQVIDIFDSRFEADKILALLDSDTVLQRFGLTREDLPLLHDTAARLNIRWGWDETMRDGTDPLFTWRQGLDRI
ILGWMLPDNGALWQGHAPWHTDPGHIPVLARFAAFLRRLAHWRQTWQQSASAAVWTQRIGAMAEDLFAQDDQGRQDIQQL
AAALARWQQETDLAGFDGALDSATANRHLARFLDSRSEAGFLHGGITFCSMVPMRSLPFKTLCLLGLNDGQFPRDTRAAA
FDLIARHPRRGDRARRDDDRYLFLEALVSARRHLYLSYVYRSIRSNEELAPSALLNELADCLADMTGTTLDTLRSTKIEQ
HPLQAFSTRYFDGNGLAGSRSDYAEALNRPSEQAAPFYTAPLSDDTPPEHVSQADFLDFWKNPVRHWLRRKLDWRAPYRD
EAWQSAEPFDPPRGRDTAAAYTEARRLHQDFADTAAALEARSMLPAGELGTLWRGQYEAAAKSLDQTLLDSPALPDAPYE
YFSDGLTLRGSLGSLHAHGQIHILDHRPNAPEQTVLLLQHLICNAVRPAAAADLRSHWIQPDRILTLPPIGTEAVHRKSS
TAGSPGGAAAKTAPCPSSPKPPSPPPKPCLRAAKKTKRNAAKPPAPQPAPPTSAAKTAPARQTTPKSPRFSYRNDTPPVE
EDDFWLLAENLVLPLLSAVRETDGQSD

Nucleotide


Download         Length: 3204 bp        

>NTDB_id=651956 LVJ84_RS04490 WP_342345874.1 744610..747813(-) (recC) [Kingella potus strain 3/SID/1128]
ATGCTCCGTCTCTACCAGTCCAACCGCCTCGAAGATTTGGCCGCGCTGCTGCAAAAAGTACAGGAAAGCAGCCCCTTGTC
CGAGCCGCTGCTGCCGGAAGAAATCATCGTGCAGAGCCAGGGGATGCGGCGTTTTATCGGCAACTATCTGGCCGAACATA
GCGGCATCGCGGCCAACATCCGCTTCTCCCTGCCCGCCGGCTTCAACTGGCGGCTGGTGCGCAGCCTGCTGCCGGACATT
CCCGAGCTGAGCCCGTTCGACACCGAAGTCATGCGCTGGAGGCTTTTGGGGCTGTTTGTTTCAGACGGCCTCTCGTCTGC
CGGACTGGCAGCGGCAAAAGCCGCGCTGTCGGGCTACCTCTCCGGCGGCGGCGCGGCGGCCTACCAGCTCGCAGGGCAGC
TTGCCGACATTTTCGACCAGTACCTCGTCTACCGCCCCGACTGGACCGACGCATGGCAGCGCGGCAGGCTGCTGGATTTG
GGCGGCGACGAAGCATGGCAGGCCGAACTGTGGCGTTTCCTGAACGACGGCCAAACCGCGCCCCACCGCGTGGAAATGTG
GCACAGGCTGGAAAAAGCCCTCGAATCGCCGCCCGCAAACGCCCTGCCGGAACGCATCTGCGTTTTCGGCATCGCCGCGC
TCGCCCCGATGTATCTGCAACTCTTACAGGCCGTCGCTCGGCACAGCGAAGTGCACATCTTCGCCCTGAACCCCTCCTCC
GAATACTGGGGCAACATCATCGATCCCGCGCAAATCCTCGCCGAAGGCGGCGGCACCGGCCTGTCTGCCGCCGGCCACCC
GCTTCTGGCCTCGCTGGGCAAGCAGGGGCGCGACTTCTTCAACGCCCTTGCCGAAAGCGAAGCGCACACCGACCTCTCCG
TCTATCACGACCACCCGCTTTCCGACAGCCTGCTGCACCGCCTGCAATACGGCCTGCAAACCCTCGCCCCGCCGGACAAA
ACCGCCGCATTGGACGACAGCATCCGCATCGTTTCCGCCCACAGCCCCCTGCGCGAACTGGAAATCCTCAAAGACCACCT
GCTAGCCCTGTTCGCCCGCGATCCCGATCTGCAGGCACACGACACCGTCGTCCTCACCCCCGACATCGAACCCTACGCCC
CCTACATCGAAGCCGTTTTCGGACGCGAAAGCGGCCGCCCCCTGCCCTACTCCCTGGCCGACGTGAAACTCAGCCGCCGC
CGCCCCCTGCTCCACGCCGTCGGACAAGTGATCGACATCTTCGACAGCCGCTTCGAAGCCGACAAAATCCTCGCCCTGCT
CGACAGCGACACCGTCCTGCAACGCTTCGGCCTCACCCGCGAAGACCTCCCCCTGCTGCACGACACCGCCGCCCGCCTCA
ACATCCGCTGGGGCTGGGACGAAACCATGCGCGACGGCACAGACCCCCTCTTCACCTGGCGGCAGGGGCTGGACCGCATC
ATCCTCGGCTGGATGCTGCCCGACAACGGCGCACTCTGGCAGGGACACGCCCCCTGGCACACCGACCCCGGCCACATCCC
CGTCCTCGCCCGTTTTGCCGCCTTCCTCCGCCGCCTCGCCCACTGGCGGCAGACCTGGCAGCAGAGCGCGTCCGCCGCCG
TTTGGACACAGCGCATCGGCGCAATGGCCGAAGACCTGTTCGCCCAAGACGACCAGGGCCGCCAAGACATCCAGCAGCTT
GCCGCAGCACTCGCCCGCTGGCAGCAGGAAACCGACCTTGCCGGCTTCGACGGCGCACTCGATTCCGCCACCGCCAACCG
CCACCTCGCCCGCTTTCTCGACAGCCGCAGCGAAGCCGGCTTCCTGCACGGCGGCATCACCTTTTGCAGCATGGTGCCCA
TGCGTTCCCTGCCCTTCAAAACCCTCTGCCTGCTCGGCCTGAACGACGGACAATTCCCCCGCGACACCCGCGCCGCCGCC
TTCGACCTCATCGCCCGCCACCCCCGCAGGGGCGACCGCGCCCGCCGCGACGACGACCGCTACCTCTTCCTCGAAGCCCT
CGTCAGCGCGCGCCGCCACCTCTATCTCTCCTATGTCTACCGCAGCATCCGCAGCAACGAAGAACTCGCCCCCTCCGCCC
TGCTCAACGAACTGGCCGACTGCCTCGCCGACATGACCGGCACCACCCTCGACACCCTCCGCAGCACCAAGATAGAGCAA
CACCCCCTGCAAGCCTTCTCCACCCGCTACTTCGACGGCAACGGCCTGGCCGGCAGCCGCAGCGACTACGCCGAAGCCCT
CAACCGCCCGTCCGAGCAGGCCGCCCCCTTCTACACCGCCCCCCTGTCCGACGACACCCCGCCGGAACACGTCTCCCAAG
CCGACTTCCTCGACTTCTGGAAAAACCCCGTCCGCCACTGGCTGCGCCGCAAGCTCGACTGGCGCGCCCCCTACCGCGAC
GAAGCCTGGCAGTCTGCCGAACCCTTCGACCCCCCGCGCGGACGCGACACCGCCGCCGCCTACACCGAAGCCCGCCGCCT
GCACCAAGACTTCGCCGACACCGCCGCCGCCCTCGAAGCCCGCTCCATGCTGCCCGCCGGCGAACTCGGCACACTCTGGC
GCGGGCAATACGAAGCCGCCGCCAAATCCCTCGACCAAACCCTGCTCGACAGCCCCGCCCTGCCCGATGCCCCCTACGAA
TACTTTTCAGACGGCCTCACACTCCGCGGCAGCCTCGGCAGCCTGCACGCGCACGGGCAAATCCACATCCTCGACCACCG
CCCCAACGCCCCCGAGCAAACCGTCCTCCTGCTGCAACACCTCATCTGCAACGCCGTCCGTCCCGCTGCGGCAGCCGACC
TGCGCAGCCACTGGATACAGCCCGACCGCATCCTCACCCTGCCGCCCATCGGTACCGAAGCCGTGCACAGGAAATCCTCG
ACGGCTGGCTCGCCTGGTGGCGCAGCGGCCAAAACCGCCCCCTGCCCTTCTTCGCCAAAACCACCCTCGCCGCCGCCGAA
GCCCTGCTTGCGGGCAGCCAAAAAAACGAAGCGGAACGCCGCAAAGCCGCCCGCACCGCAGCCCGCGCCGCCTACTTCGG
CAGCAAAAACAGCACCGGCCAGGCAGACTACGCCGAAGTCGCCCAGGTTTTCTTACCGCAACGACACCCCGCCCGTCGAA
GAAGACGACTTCTGGCTGCTGGCCGAAAACCTCGTCCTCCCCCTTTTGTCCGCCGTACGGGAAACAGACGGCCAATCCGA
TTAA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-310)

RecC C-terminal domain (RecC_C)

(768-935)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

53.313

90.534

0.483