Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LVJ84_RS00180 Genome accession   NZ_CP091516
Coordinates   27915..29384 (+) Length   489 a.a.
NCBI ID   WP_172461202.1    Uniprot ID   A0A377QYT1
Organism   Kingella potus strain 3/SID/1128     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 22915..34384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ84_RS00160 (LVJ84_00160) tfpZ 22974..23759 (+) 786 WP_115307796.1 TfpX/TfpZ family type IV pilin accessory protein -
  LVJ84_RS00165 (LVJ84_00165) apbC 23827..24906 (-) 1080 WP_115307797.1 iron-sulfur cluster carrier protein ApbC -
  LVJ84_RS00170 (LVJ84_00170) - 25007..26302 (-) 1296 WP_115307798.1 pitrilysin family protein -
  LVJ84_RS15190 - 26299..26694 (-) 396 WP_342345867.1 hypothetical protein -
  LVJ84_RS00175 (LVJ84_00175) - 26676..27686 (-) 1011 WP_342345868.1 pitrilysin family protein -
  LVJ84_RS00180 (LVJ84_00180) pilA 27915..29384 (+) 1470 WP_172461202.1 signal recognition particle-docking protein FtsY Machinery gene
  LVJ84_RS00185 (LVJ84_00185) - 29721..30005 (-) 285 WP_115307800.1 hypothetical protein -
  LVJ84_RS00190 (LVJ84_00190) - 30292..31080 (-) 789 WP_244731951.1 inositol monophosphatase family protein -
  LVJ84_RS00195 (LVJ84_00195) - 31180..31901 (+) 722 Protein_37 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  LVJ84_RS00200 (LVJ84_00200) prmA 32026..32913 (+) 888 WP_115307803.1 50S ribosomal protein L11 methyltransferase -
  LVJ84_RS00205 (LVJ84_00205) - 32870..33073 (-) 204 WP_244731954.1 hypothetical protein -
  LVJ84_RS00210 (LVJ84_00210) gap 33258..34291 (-) 1034 Protein_40 type I glyceraldehyde-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 489 a.a.        Molecular weight: 51745.67 Da        Isoelectric Point: 4.4898

>NTDB_id=651949 LVJ84_RS00180 WP_172461202.1 27915..29384(+) (pilA) [Kingella potus strain 3/SID/1128]
MALFDFLFKRKTDTPAPPVSEDSPPTQRPSENDIPAPPAAEAAEAVEAVEAAEAADEREQFLRDIRSSSNSSQRSSLLRS
DAGNSTQDAAEHENATQENTASDPVSDGLEATNRPSENPNPSARSAQETAADATADEPTAAHTDTCATVHRPSENRPAAD
AATAETATGANPPAVRAEEPPAAESRSGWAARLKQGLGKSRDKMAKSLAGVFGGGKIDEDLYEELETVLLTSDMGIEATD
QIMEDVRRRVSLKGLSDGTELRRALKESLYEMLAPLEKPLEIPDNGQPFVIMMAGINGAGKTTSIGKLAKYFQQQGQSVI
LAAGDTFRAAAREQLQEWGARNGVTVVSQEKGDAAAVCYDAVESAKARHTGIVLADTAGRLPTQLHLMEEIKKVKRVLQK
AMPDAPHEIIVVLDANIGQNAVNQVIAFDDALGVTGLIVTKLDGTAKGGVLAALAAARPIPVRYIGVGEGIDDLRPFDAR
AFVDALIDG

Nucleotide


Download         Length: 1470 bp        

>NTDB_id=651949 LVJ84_RS00180 WP_172461202.1 27915..29384(+) (pilA) [Kingella potus strain 3/SID/1128]
ATGGCACTATTCGACTTCCTCTTCAAACGCAAAACCGACACTCCCGCCCCTCCCGTTTCAGAAGACAGCCCGCCAACGCA
GAGGCCGTCTGAAAACGACATCCCCGCACCGCCCGCAGCCGAAGCCGCAGAAGCCGTAGAAGCCGTAGAAGCTGCAGAAG
CCGCCGACGAACGCGAGCAATTCCTGCGCGACATCCGCAGCAGCAGCAACAGCAGCCAGCGCAGCAGCCTGCTGCGTTCC
GATGCGGGAAACAGTACGCAAGACGCAGCGGAACACGAAAACGCAACACAGGAAAACACAGCATCCGACCCCGTTTCAGA
TGGCCTCGAAGCAACAAACAGGCCGTCTGAAAACCCAAACCCGTCCGCCCGGTCGGCGCAAGAAACAGCGGCAGACGCAA
CGGCTGACGAGCCGACCGCCGCGCATACGGATACCTGCGCAACGGTACACAGGCCGTCTGAAAACCGCCCCGCAGCCGAC
GCGGCAACGGCAGAAACGGCAACAGGCGCAAACCCGCCCGCCGTCCGCGCAGAAGAGCCGCCCGCAGCCGAAAGCCGCAG
CGGCTGGGCGGCGCGGCTCAAACAAGGCCTCGGCAAATCGCGCGACAAAATGGCCAAATCCCTCGCCGGCGTGTTCGGCG
GCGGCAAAATCGACGAAGACCTCTACGAAGAACTCGAAACCGTTCTGCTCACCAGCGACATGGGCATCGAAGCCACAGAT
CAAATCATGGAAGACGTGCGCCGCCGCGTTTCCCTGAAAGGCCTGTCCGACGGCACCGAACTGCGCCGCGCCCTCAAAGA
ATCCCTGTACGAGATGCTCGCCCCGCTGGAAAAACCCCTCGAAATCCCCGACAACGGCCAACCCTTCGTCATCATGATGG
CCGGCATCAACGGCGCGGGCAAAACCACCTCCATCGGCAAACTGGCCAAATATTTCCAACAGCAGGGCCAATCCGTCATC
CTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCCGCGAACAGCTCCAAGAATGGGGCGCGCGCAACGGCGTAACTGTGGT
TTCCCAAGAAAAAGGGGATGCCGCCGCCGTCTGCTACGATGCCGTCGAGTCTGCCAAAGCCCGCCATACCGGCATCGTCC
TCGCCGATACCGCCGGCCGCCTGCCCACCCAGCTTCATCTGATGGAAGAAATCAAAAAAGTGAAGCGCGTCCTGCAAAAA
GCCATGCCCGACGCACCGCACGAAATCATCGTCGTTTTGGACGCAAACATCGGCCAAAACGCCGTGAACCAGGTCATTGC
CTTCGATGACGCGCTGGGCGTAACCGGCCTCATCGTTACCAAACTCGACGGCACCGCCAAAGGCGGCGTACTCGCCGCCC
TCGCCGCCGCCCGCCCGATTCCCGTGCGCTACATCGGCGTGGGCGAAGGCATAGACGATTTGCGCCCCTTCGATGCCCGC
GCCTTTGTGGACGCGTTAATCGACGGCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(203-269)

SRP54-type protein, GTPase domain (SRP54)

(288-487)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377QYT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

68.939

80.982

0.558