Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHT51_RS29000 Genome accession   NZ_CP108039
Coordinates   6519055..6520788 (-) Length   577 a.a.
NCBI ID   WP_328881857.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00299     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6514055..6525788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT51_RS28990 (OHT51_29040) - 6515059..6516990 (-) 1932 WP_328881855.1 dynamin family protein -
  OHT51_RS28995 (OHT51_29045) rcrQ 6517127..6519055 (-) 1929 WP_328881856.1 ABC transporter ATP-binding protein Regulator
  OHT51_RS29000 (OHT51_29050) rcrP 6519055..6520788 (-) 1734 WP_328881857.1 ABC transporter ATP-binding protein Regulator
  OHT51_RS29005 (OHT51_29055) - 6520960..6522414 (-) 1455 WP_328881858.1 FGGY family carbohydrate kinase -
  OHT51_RS29010 (OHT51_29060) - 6522614..6522922 (-) 309 WP_328881859.1 YtxH domain-containing protein -
  OHT51_RS29030 (OHT51_29080) - 6523534..6525273 (-) 1740 WP_328881860.1 VanW family protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62813.07 Da        Isoelectric Point: 6.4063

>NTDB_id=651943 OHT51_RS29000 WP_328881857.1 6519055..6520788(-) (rcrP) [Streptomyces sp. NBC_00299]
MLIRLLRTYLRPYRKPIAWLVLLQFLQTCATLYLPTLNADIIDKGVVTGDTGYILSYGALMIGISLAQVVCNIGAVYYGA
RTAAALGRDVRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPVLGISVTLIVRRLRPLFRSMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQHRFRKANAELTDMAMGTGKLLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLDTSSSVVP
PVVPVRELRRHGHLEIRGAGFRYPGAEEPVLKSIDLVALPGETTAVIGSTGSGKSTLLGLVPRLFDATDGRVLVDGEDVA
TIDPQLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWQALEVAQAKEFVERLEGGLNAPVSQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAEATVVIVAQRVATIRDADRIVVLDEGQVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=651943 OHT51_RS29000 WP_328881857.1 6519055..6520788(-) (rcrP) [Streptomyces sp. NBC_00299]
GTGCTCATACGACTTCTGCGGACCTACCTCAGGCCCTACCGAAAACCCATTGCCTGGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACGCTGAACGCGGACATCATCGACAAGGGTGTCGTCACCGGCGACACCGGCTACA
TCCTGTCCTACGGCGCCCTGATGATCGGCATCTCGCTGGCGCAGGTCGTGTGCAACATCGGTGCCGTGTACTACGGCGCC
CGGACCGCGGCGGCGCTCGGCCGGGACGTGCGGGCCGCCGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGTGAGGTGGG
GCACTTCGGCGCGCCCTCGCTGATCACCCGGACGACCAATGACGTCCAGCAGGTGCAGATGCTGGCGCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGCTCGCCCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTGGTGGCCGTGGTGCCGGTCCTCGGCATCAGCGTGACCTTGATCGTGCGGCGGCTGCGGCCGCTGTTCCGGAGCATGCA
GGTGCGTCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGTGCCTTCGTCCGCGACG
AGTACGAGCAGCACCGCTTCCGCAAGGCCAACGCCGAGCTCACCGACATGGCGATGGGGACGGGCAAGCTGCTCGCGCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCCCATCGCATCGACAGCGG
CGGGATGCAGATCGGTGACCTGACGGCCTTCCTCGCCTATCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGTGTCCAGGAGGTCCTGGACACGTCGTCGAGCGTGGTGCCG
CCGGTCGTGCCGGTGCGGGAGCTGCGCCGGCACGGTCATCTGGAGATCCGGGGTGCCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTGAAGTCGATCGACCTGGTCGCGCTGCCGGGCGAGACGACCGCCGTCATCGGCTCGACGGGCAGCGGGA
AGTCGACCCTGCTGGGCCTCGTCCCGCGACTGTTCGACGCGACCGACGGGCGGGTGCTCGTGGACGGGGAGGACGTGGCG
ACCATCGATCCCCAGCTGCTGGCCAGGACCGTCGGGCTGGTGCCGCAGAAGCCGTACCTGTTCGCCGGGACGGTCGCGAC
CAACCTGCGCTACGGCAATCCGGACGCGACGGACGAGGAGCTGTGGCAGGCGCTTGAGGTGGCGCAGGCCAAGGAGTTCG
TCGAGCGGCTGGAGGGCGGGCTGAACGCGCCCGTCTCGCAGGGCGGGACCAATGTCTCCGGTGGGCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTCCAGCGCCCGGAGATCTATCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCCGCGCTGCGTGCGGCGCTCGGGCGCGAGACCGCCGAGGCGACCGTCGTCATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTCGTGCTCGACGAGGGGCAGGTCGTCGGCACGGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACATACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.539

97.747

0.386