Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHT51_RS28995 Genome accession   NZ_CP108039
Coordinates   6517127..6519055 (-) Length   642 a.a.
NCBI ID   WP_328881856.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00299     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6512127..6524055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT51_RS28985 (OHT51_29035) - 6513154..6515037 (-) 1884 WP_328881854.1 dynamin family protein -
  OHT51_RS28990 (OHT51_29040) - 6515059..6516990 (-) 1932 WP_328881855.1 dynamin family protein -
  OHT51_RS28995 (OHT51_29045) rcrQ 6517127..6519055 (-) 1929 WP_328881856.1 ABC transporter ATP-binding protein Regulator
  OHT51_RS29000 (OHT51_29050) rcrP 6519055..6520788 (-) 1734 WP_328881857.1 ABC transporter ATP-binding protein Regulator
  OHT51_RS29005 (OHT51_29055) - 6520960..6522414 (-) 1455 WP_328881858.1 FGGY family carbohydrate kinase -
  OHT51_RS29010 (OHT51_29060) - 6522614..6522922 (-) 309 WP_328881859.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69596.93 Da        Isoelectric Point: 5.3108

>NTDB_id=651942 OHT51_RS28995 WP_328881856.1 6517127..6519055(-) (rcrQ) [Streptomyces sp. NBC_00299]
MAGPMGRMMAGGGPDQRSLDFKVSGRRLIAQFKPERVTIYALLVCVVVSVGLSVAGPKILGAATDLVFAGIVGRQFESGM
SKEQALAAMRERGDNQIADMLRSTDFTPGQGIDFGAVGNVLLFALAVFLVAGLLMAVATRLVNRAVNRTMFRMREDVQTK
LSRLPLSYFDKSRRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLAMMFWVSWLLALVALVTVPLSFVVATRVGK
RSQPHFVQQWRTTGKLNAHVEEMYTGHTLVKVFGRQEESAQQFAEQNEELYEAGFKAQFNSGVMQPLMLFVSNINYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQGADPVPGVRPEELRGRVALE
GVSFRYDPEKPLIEDLSLAVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSSGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASRDVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHEELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=651942 OHT51_RS28995 WP_328881856.1 6517127..6519055(-) (rcrQ) [Streptomyces sp. NBC_00299]
ATGGCCGGGCCGATGGGGCGGATGATGGCCGGCGGCGGCCCCGATCAGCGCTCGCTGGACTTCAAGGTCTCGGGCAGGCG
ACTGATCGCGCAGTTCAAGCCCGAGCGGGTCACCATCTACGCGCTGCTGGTCTGCGTGGTCGTGAGCGTGGGCCTCTCGG
TCGCCGGACCGAAGATCCTCGGTGCGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGCAGTTCGAGTCCGGGATG
AGCAAGGAGCAGGCCCTCGCGGCCATGCGGGAGCGCGGCGACAACCAGATCGCCGACATGCTGCGCAGCACCGACTTCAC
ACCGGGCCAGGGCATCGACTTCGGCGCGGTGGGGAACGTACTGCTCTTCGCACTCGCCGTGTTCCTCGTGGCCGGTCTGC
TGATGGCGGTGGCGACGCGGCTGGTGAACCGTGCCGTGAACCGGACGATGTTCCGGATGCGGGAGGACGTCCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGAGCCGGCGCGGTGAGGTGCTGTCCCGGGCGACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTCATCAACTCGGTGCTCACCATCATCGGTGTGCTGGCGATGATGT
TCTGGGTGTCGTGGCTGCTGGCACTGGTCGCGCTGGTGACCGTGCCGCTGTCCTTCGTGGTCGCCACGCGCGTCGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGAGGAGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGCTGTTCGTGTCGAACATCAACTACGTCCTGGTCGCG
GTGGTCGGCGGTCTGCGCGTGGCGTCCGGCTCGCTGTCCATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTCGTGCAGTCGGGTGTCGCCTCGGCGGAGCGGATCTTCGAGC
TGCTGGACGCCGAGGAGCAGGGCGCGGATCCCGTGCCGGGTGTGCGGCCCGAGGAGCTGCGGGGGCGGGTGGCGCTGGAG
GGCGTGTCCTTCCGGTACGACCCGGAGAAGCCGCTGATCGAGGACCTGTCGCTGGCGGTGGAGCCCGGGCACACGGTCGC
GATCGTCGGTCCCACGGGTGCCGGCAAGACGACGCTGGTGAACCTGCTGATGCGCTTCTACGACGTGTCGTCCGGGCGCA
TCACCCTCGACGGGGTCGACATCGCCCGGATGTCCCGGGACGAACTGCGGGCCGGGATCGGGATGGTGCTGCAGGACACG
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGCGCCTCCCGGGACGTCACCCGGGGCGAGATCGAGGAGGC
GGCTCGGGCCGCCCACGCCGATCGGTTCATCCGTACGCTGCCCGACGGGTACGACACGGTGATCGACGACGAGGGCAGCG
GGGTCAGCGCCGGTGAGAAGCAGCTGATCACCATCGCTCGGGCGTTCCTGTCGGATCCGGTGATTCTGGTGCTGGACGAG
GCGACGTCGTCGGTCGACACCCGTACGGAGGTGTTGATCCAGAAGGCGATGGCGAAGCTCGCGCATGGGCGCACGTCGTT
CGTGATCGCGCATCGGTTGTCGACCATCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGCTCGATCGTGGAACAGG
GCGCGCACGAGGAGCTGTTGGCGGCCGACGGGGCGTATGCGCGGTTGTACAAGGCGCAGTTCGCCCAGGCGGTGGCCGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(42-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.549

96.417

0.391