Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LVJ87_RS10605 Genome accession   NZ_CP091515
Coordinates   2295890..2297263 (-) Length   457 a.a.
NCBI ID   WP_025330660.1    Uniprot ID   -
Organism   Snodgrassella alvi wkB2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2290890..2302263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ87_RS10580 (LVJ87_10580) - 2291586..2291999 (-) 414 WP_038648842.1 GtrA family protein -
  LVJ87_RS10585 (LVJ87_10585) - 2291999..2292958 (-) 960 WP_025330664.1 glycosyltransferase family 2 protein -
  LVJ87_RS10590 (LVJ87_10590) - 2293043..2294446 (-) 1404 WP_051506443.1 glycosyltransferase family 39 protein -
  LVJ87_RS10595 (LVJ87_10595) - 2294706..2295356 (-) 651 WP_025330662.1 fumarylacetoacetate hydrolase family protein -
  LVJ87_RS10600 (LVJ87_10600) - 2295499..2295801 (-) 303 WP_025330661.1 putative quinol monooxygenase -
  LVJ87_RS10605 (LVJ87_10605) radA 2295890..2297263 (-) 1374 WP_025330660.1 DNA repair protein RadA Machinery gene
  LVJ87_RS10610 (LVJ87_10610) putP 2297888..2299375 (+) 1488 WP_025330659.1 sodium/proline symporter PutP -
  LVJ87_RS10615 (LVJ87_10615) radC 2299503..2300177 (+) 675 WP_025330658.1 DNA repair protein RadC -
  LVJ87_RS10620 (LVJ87_10620) yajC 2300303..2300602 (+) 300 WP_025330657.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49051.36 Da        Isoelectric Point: 7.1546

>NTDB_id=651942 LVJ87_RS10605 WP_025330660.1 2295890..2297263(-) (radA) [Snodgrassella alvi wkB2]
MVKQKTQFQCRSCGGSSPKWQGRCPHCGEWNTLEETTVLSAPSSGSRFQSWASSESAVQLLAEVSAVEIQRTPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIALMAEQESVLYVSGEESAQQVALRAQRLGVHADKVHLLAEIRVEAISAV
IARQKPRVVVIDSIQTMYSDGITSAPGSVSQVRECAAQLTRLAKQQGISMLLVGHVTKDGAIAGPRVLEHMVDTVLYFEG
ETHSNYRMIRAIKNRFGAANELGVFAMTEKGLKGVSNPSALFLSSYRDDVPGSCVLVTQEGSRPLLVEIQALVDDAHGFA
PKRLTVGLAQERLAMLLAVLNRHAGIACYDQDVFLNAVGGVKITEPAADLAVILAMLSSYRNRPLPEKLIVFGEVGLSGE
IRPVPRGQERLREAEKLGFTHAIVPAANCPKRTADFPRLTIIGVNSVQEGVDATRRD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=651942 LVJ87_RS10605 WP_025330660.1 2295890..2297263(-) (radA) [Snodgrassella alvi wkB2]
ATGGTAAAGCAGAAAACTCAGTTTCAATGTCGCAGTTGTGGTGGAAGCTCACCTAAATGGCAGGGGCGTTGTCCTCATTG
TGGCGAATGGAATACTCTGGAAGAAACAACAGTTTTATCTGCACCTTCTTCTGGCAGCCGTTTTCAATCATGGGCATCAA
GTGAATCGGCGGTACAGTTACTGGCAGAAGTCAGTGCGGTTGAAATACAGAGAACGCCAACAGGAATGGGTGAGCTGGAC
AGAGTACTTGGAGGTGGTTTAGTAGACGGAGCTGTTATTTTGCTAGGCGGAGATCCGGGTATTGGTAAATCTACATTATT
GCTACAAACAATAGCCTTGATGGCCGAACAGGAATCCGTATTGTATGTTTCCGGAGAAGAGTCAGCTCAGCAGGTTGCTT
TACGTGCACAGCGTCTTGGTGTACATGCAGACAAAGTTCATTTACTGGCAGAAATACGTGTAGAGGCAATCAGTGCAGTT
ATTGCACGCCAAAAACCCAGAGTGGTAGTAATCGATTCTATTCAGACCATGTATTCTGATGGTATTACTTCAGCACCCGG
TTCTGTATCACAGGTTAGGGAATGTGCAGCACAATTAACCCGCCTGGCAAAACAACAGGGTATCAGCATGTTGCTGGTTG
GTCATGTAACCAAAGATGGCGCGATTGCCGGTCCCCGGGTGCTGGAGCATATGGTGGATACGGTATTGTATTTTGAAGGG
GAAACTCATTCAAATTATCGTATGATTCGTGCTATTAAAAACCGTTTTGGTGCCGCTAATGAGTTAGGTGTTTTTGCAAT
GACAGAAAAAGGGCTGAAGGGGGTTTCCAATCCTTCAGCATTGTTTTTATCCAGTTATCGCGATGATGTTCCCGGCTCAT
GCGTTCTCGTTACTCAGGAAGGTTCACGCCCCTTACTGGTAGAAATTCAGGCACTTGTTGATGATGCTCATGGTTTTGCT
CCAAAACGACTAACTGTAGGGCTGGCTCAGGAGCGTCTGGCCATGTTGCTGGCTGTGCTGAACCGTCATGCAGGTATCGC
TTGTTATGATCAGGACGTGTTTCTTAATGCTGTAGGTGGTGTGAAAATTACTGAACCGGCAGCAGATCTGGCAGTGATTC
TGGCCATGCTTTCAAGCTATCGTAATCGACCATTACCGGAAAAGCTGATTGTATTCGGAGAAGTCGGGTTATCAGGTGAA
ATTCGTCCAGTTCCTCGTGGACAGGAACGTTTGCGAGAGGCAGAAAAACTTGGATTTACTCATGCCATAGTACCTGCAGC
TAATTGTCCCAAACGAACGGCAGATTTTCCGAGGCTGACTATTATCGGGGTAAATTCGGTACAGGAAGGTGTAGATGCTA
CACGACGTGATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)

AAA domain (AAA_25)

(72-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.561

99.781

0.495
  radA Streptococcus pneumoniae Rx1

48

98.468

0.473
  radA Streptococcus pneumoniae D39

48

98.468

0.473
  radA Streptococcus pneumoniae TIGR4

48

98.468

0.473
  radA Streptococcus pneumoniae R6

48

98.468

0.473
  radA Streptococcus mitis NCTC 12261

47.778

98.468

0.47
  radA Streptococcus mitis SK321

47.884

98.249

0.47