Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT51_RS28425 Genome accession   NZ_CP108039
Coordinates   6396030..6396689 (+) Length   219 a.a.
NCBI ID   WP_328881749.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00299     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6391030..6401689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT51_RS28410 (OHT51_28460) - 6391736..6392434 (+) 699 WP_328881746.1 TerB family tellurite resistance protein -
  OHT51_RS28415 (OHT51_28465) - 6392643..6394739 (+) 2097 WP_328881747.1 MMPL family transporter -
  OHT51_RS28420 (OHT51_28470) - 6394786..6396033 (+) 1248 WP_328881748.1 histidine kinase -
  OHT51_RS28425 (OHT51_28475) vraR 6396030..6396689 (+) 660 WP_328881749.1 response regulator transcription factor Regulator
  OHT51_RS28430 (OHT51_28480) - 6396729..6397934 (+) 1206 WP_328881750.1 sialidase family protein -
  OHT51_RS28435 (OHT51_28485) - 6398084..6399019 (-) 936 WP_328884465.1 dihydrodipicolinate synthase family protein -
  OHT51_RS28440 (OHT51_28490) - 6399019..6400038 (-) 1020 WP_328881751.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23242.73 Da        Isoelectric Point: 4.4420

>NTDB_id=651941 OHT51_RS28425 WP_328881749.1 6396030..6396689(+) (vraR) [Streptomyces sp. NBC_00299]
MIRVLLADDQTLVREAFAMLVESAPDMEVVGQAATGREAAELARGTRADLVVMDIRMPDLDGIEATRLIAADEDLAGVRV
LVLTTYDTDENIVDALRAGASGFLVKDTRPAELLDAIRTVAAGEALLSPGPTARLIERFLRSPSAPTAGGPDCLSERERE
VLTLVARGLNNTEIAEALGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGMVTPGIL

Nucleotide


Download         Length: 660 bp        

>NTDB_id=651941 OHT51_RS28425 WP_328881749.1 6396030..6396689(+) (vraR) [Streptomyces sp. NBC_00299]
ATGATCCGCGTCCTGCTCGCGGACGACCAGACGCTCGTACGTGAGGCGTTCGCCATGCTCGTCGAGTCGGCCCCCGACAT
GGAGGTCGTCGGTCAGGCGGCCACCGGCAGGGAGGCCGCGGAACTGGCCCGTGGCACCCGCGCCGACCTCGTCGTGATGG
ACATCCGCATGCCCGACCTCGACGGCATCGAGGCGACCCGCCTGATCGCGGCCGACGAGGACCTGGCGGGGGTGCGCGTC
CTGGTCCTCACCACCTACGACACCGACGAGAACATCGTGGACGCACTGCGCGCCGGCGCCTCCGGATTCCTGGTCAAGGA
CACCCGCCCGGCCGAACTCCTCGACGCCATCCGCACGGTGGCCGCGGGGGAGGCGCTCCTGTCGCCGGGGCCGACCGCAC
GGCTGATCGAGCGGTTCCTGCGCAGCCCTTCCGCGCCCACCGCCGGCGGACCCGATTGCCTGTCCGAACGTGAACGCGAA
GTGCTGACGCTGGTCGCCCGCGGGCTCAACAACACGGAAATCGCGGAAGCATTGGGGCTCAGCCCGCTGACGGCGAAGAC
ACACGTCAGCCGCATCATGGGGAAGCTGGGCGCCCGGGACCGGGCGCAGTTGGTCATCGTGGCCTATGAGTCAGGGATGG
TGACACCGGGGATCCTGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-118)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.089

97.26

0.361