Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT51_RS22500 Genome accession   NZ_CP108039
Coordinates   5091100..5091780 (-) Length   226 a.a.
NCBI ID   WP_328880716.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00299     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5086100..5096780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT51_RS22500 (OHT51_22545) vraR 5091100..5091780 (-) 681 WP_328880716.1 response regulator transcription factor Regulator
  OHT51_RS22505 (OHT51_22550) - 5091777..5093018 (-) 1242 WP_328880717.1 histidine kinase -
  OHT51_RS22510 (OHT51_22555) - 5093113..5093682 (+) 570 WP_328880718.1 GNAT family N-acetyltransferase -
  OHT51_RS22515 (OHT51_22560) - 5093756..5095357 (-) 1602 WP_328880719.1 type IV secretory system conjugative DNA transfer family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24609.98 Da        Isoelectric Point: 5.6282

>NTDB_id=651928 OHT51_RS22500 WP_328880716.1 5091100..5091780(-) (vraR) [Streptomyces sp. NBC_00299]
MTTVLIADDQPLQRFGFRMLLESQDDMTVVGEAANGSEAIRMTAELHPDVILMDVRMPGLDGIEATRRITTTGDRTRVLI
LTTFDLDEYAYAGLRAGASGFLVKDAQPEELLSGIRAVATGDAVVAPSLTRRLLDAYAHHLPRQGRADGQEASPLEHPRL
SSLTDREREILSVIGKGWTNTEIAARLHLAESTVKTHVGRVLAKTGSRDRIQAVILAYDTGLVQPS

Nucleotide


Download         Length: 681 bp        

>NTDB_id=651928 OHT51_RS22500 WP_328880716.1 5091100..5091780(-) (vraR) [Streptomyces sp. NBC_00299]
GTGACCACCGTCCTCATAGCCGACGACCAGCCCCTCCAGCGCTTCGGCTTCCGGATGCTCCTCGAAAGCCAGGACGACAT
GACGGTGGTGGGCGAAGCCGCCAACGGCAGCGAGGCGATCCGCATGACAGCGGAACTACACCCCGACGTGATCCTCATGG
ACGTCCGCATGCCCGGCCTGGACGGCATCGAGGCCACCCGCCGCATCACCACCACCGGCGACCGCACCAGGGTGCTGATC
CTCACCACCTTCGACCTCGACGAGTACGCCTACGCCGGCCTCCGCGCAGGCGCCTCCGGCTTCCTCGTCAAGGACGCCCA
GCCGGAGGAACTCCTCTCCGGCATCCGCGCGGTCGCCACCGGCGACGCGGTCGTCGCCCCGAGCCTGACCCGCCGCCTGC
TCGACGCGTACGCCCACCACCTACCGAGGCAAGGCCGCGCCGACGGCCAGGAAGCGTCGCCCCTGGAGCACCCTCGTCTC
TCTTCCCTCACCGACCGCGAACGCGAGATCCTCTCGGTGATCGGAAAGGGCTGGACCAACACGGAGATAGCCGCCCGCCT
CCACCTGGCCGAGTCGACGGTAAAGACCCACGTGGGCCGCGTCCTCGCGAAGACCGGCTCACGAGATCGAATTCAGGCGG
TGATTCTCGCGTACGACACGGGACTGGTGCAGCCGTCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)

Bacterial regulatory proteins, luxR family (GerE)

(161-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.557

97.788

0.367