Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT51_RS19940 Genome accession   NZ_CP108039
Coordinates   4543842..4544507 (-) Length   221 a.a.
NCBI ID   WP_328880284.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00299     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4538842..4549507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT51_RS19920 (OHT51_19965) - 4539349..4540269 (+) 921 WP_328880280.1 ABC transporter ATP-binding protein -
  OHT51_RS19925 (OHT51_19970) - 4540266..4541885 (+) 1620 WP_328880281.1 ABC transporter permease -
  OHT51_RS19930 (OHT51_19975) - 4541892..4542485 (-) 594 WP_328880282.1 Uma2 family endonuclease -
  OHT51_RS19935 (OHT51_19980) - 4542574..4543794 (-) 1221 WP_328880283.1 cytochrome P450 -
  OHT51_RS19940 (OHT51_19985) vraR 4543842..4544507 (-) 666 WP_328880284.1 response regulator transcription factor Regulator
  OHT51_RS19945 (OHT51_19990) - 4544504..4545844 (-) 1341 WP_328880285.1 histidine kinase -
  OHT51_RS19950 (OHT51_19995) vraR 4545978..4546652 (-) 675 WP_328880286.1 response regulator transcription factor Regulator
  OHT51_RS19955 (OHT51_20000) - 4546649..4548019 (-) 1371 WP_328880287.1 histidine kinase -
  OHT51_RS19960 (OHT51_20005) - 4548210..4549451 (-) 1242 WP_328880288.1 acyltransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23978.64 Da        Isoelectric Point: 4.6608

>NTDB_id=651923 OHT51_RS19940 WP_328880284.1 4543842..4544507(-) (vraR) [Streptomyces sp. NBC_00299]
MTIRVLIADDQMMVREGFSVLLNAMPDIEVVGEAVNGREAVDRVRELTPDVVLMDIRMPELNGIEATREIVAADGAAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSITRRLITEFSKLSDSARLMSSAHAAYGDLTE
RETEVLVLIAQGLSNQEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=651923 OHT51_RS19940 WP_328880284.1 4543842..4544507(-) (vraR) [Streptomyces sp. NBC_00299]
ATGACCATCCGTGTGCTGATCGCGGACGACCAGATGATGGTGCGCGAGGGCTTCTCGGTCCTGCTGAACGCGATGCCGGA
CATCGAGGTCGTCGGCGAGGCGGTCAACGGACGGGAGGCGGTGGACCGGGTCCGCGAACTCACCCCGGACGTCGTGCTGA
TGGACATCCGCATGCCGGAGCTCAACGGCATCGAGGCGACTCGGGAGATCGTCGCGGCCGACGGCGCTGCGAAGGTGCTG
GTGCTGACCACCTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGCGCGGGAGCCTCCGGCTTCCTGCTGAAGGACGC
CTCGGCCCGCCAACTCGCCGACGGGGTGAGGGTGGTGGCGGCCGGCGAAGCTCTTCTCGCCCCCTCCATCACACGGCGGC
TGATCACGGAGTTCTCGAAGCTGTCCGACTCCGCGCGTCTGATGTCGTCCGCGCACGCGGCGTACGGGGATCTGACCGAG
CGGGAGACGGAGGTGCTGGTGCTGATCGCGCAGGGCCTGTCGAACCAGGAGATAGCCGAGCGGCTGGTGGTCGCCGAGTC
GACGATCAAGACCCACGTCAGCCGGATCCTGGTGAAGCTGGGCCTGCGGGACCGTACACAGGCGGCGGTGTTCGCCTACG
AGGCGCGGCTGGTCACGCCGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-212)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.954

98.643

0.443
  degU Bacillus subtilis subsp. subtilis str. 168

42.396

98.19

0.416