Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LVJ81_RS09795 Genome accession   NZ_CP091512
Coordinates   2003289..2004656 (-) Length   455 a.a.
NCBI ID   WP_019957335.1    Uniprot ID   -
Organism   Vitreoscilla stercoraria strain SAG 1488-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1998289..2009656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ81_RS09775 (LVJ81_09775) nemA 1998569..1999690 (+) 1122 WP_019957339.1 N-ethylmaleimide reductase -
  LVJ81_RS09780 (LVJ81_09780) - 1999691..2000572 (+) 882 WP_019957338.1 folate-binding protein YgfZ -
  LVJ81_RS09785 (LVJ81_09785) - 2000569..2001060 (+) 492 WP_019957337.1 DUF4442 domain-containing protein -
  LVJ81_RS09790 (LVJ81_09790) - 2001125..2003266 (-) 2142 WP_019957336.1 ATP-binding protein -
  LVJ81_RS09795 (LVJ81_09795) radA 2003289..2004656 (-) 1368 WP_019957335.1 DNA repair protein RadA Machinery gene
  LVJ81_RS09800 (LVJ81_09800) hpnE 2004760..2006064 (-) 1305 WP_019957334.1 hydroxysqualene dehydroxylase HpnE -
  LVJ81_RS09805 (LVJ81_09805) hpnD 2006061..2006912 (-) 852 WP_026353391.1 presqualene diphosphate synthase HpnD -
  LVJ81_RS09810 (LVJ81_09810) - 2006999..2007424 (-) 426 WP_019957332.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LVJ81_RS09815 (LVJ81_09815) - 2007453..2008067 (-) 615 WP_019957331.1 PilX N-terminal domain-containing pilus assembly protein -
  LVJ81_RS09820 (LVJ81_09820) - 2008052..2009257 (-) 1206 WP_026353390.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49142.48 Da        Isoelectric Point: 7.4274

>NTDB_id=651914 LVJ81_RS09795 WP_019957335.1 2003289..2004656(-) (radA) [Vitreoscilla stercoraria strain SAG 1488-6]
MAKVKTQYQCTECGGSTLKWQGQCPACGQWNTLQESVILPESQNRFDAWSQTSSKVQNLADITAEEVPRSSTGLSELDRV
LGGGLVEGAVVLIGGDPGIGKSTLLLQANALMGANRACLYVSGEESAQQVALRAQRLSLNPAHIHLLAEIRLEAIVQHLR
ERQPKVAVIDSIQTLYSDQITSAPGSVSQVRECAAQLTRVAKQTGVTILLVGHVTKDGAIAGPRVLEHMVDAVLYFEGDT
HSNYRMIRAIKNRFGAANELGVFAMTDKGLKGVANPSAIFLASYRDDVPGSCVLVTQEGSRPLLVEIQALVDDAHGFTPK
RLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKIMEPAADLAVILAMVSSHRNRPLPQKMIVFGEIGLSGEVR
PVSRGQERLKEAEKLGFTHAIIPKANLPRQKSDFPQLTLHGVSSIQEAVEICRRD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=651914 LVJ81_RS09795 WP_019957335.1 2003289..2004656(-) (radA) [Vitreoscilla stercoraria strain SAG 1488-6]
ATGGCCAAAGTTAAAACGCAATACCAATGTACAGAGTGTGGTGGTAGCACTTTGAAATGGCAGGGGCAATGTCCTGCTTG
TGGGCAATGGAATACCTTGCAAGAAAGTGTCATTTTGCCTGAAAGCCAAAACCGTTTTGATGCGTGGAGCCAAACCAGCA
GCAAAGTGCAAAACTTGGCAGATATTACCGCTGAAGAAGTGCCTCGCTCTAGTACAGGTTTGTCTGAATTAGACCGTGTG
TTAGGTGGCGGTTTGGTTGAGGGCGCGGTGGTTTTGATTGGTGGCGATCCTGGTATAGGTAAATCTACTTTATTGTTACA
AGCGAACGCATTGATGGGGGCTAATCGTGCTTGCTTGTATGTTTCAGGCGAAGAGTCGGCGCAGCAAGTGGCTTTGCGGG
CACAGCGTTTGAGCTTGAATCCTGCACACATTCACTTATTGGCAGAAATTCGTCTAGAGGCCATTGTGCAACATCTGCGC
GAGCGCCAGCCTAAAGTGGCGGTCATCGATTCGATTCAAACGCTGTATTCAGATCAAATCACTTCTGCTCCAGGCTCAGT
GTCGCAAGTGCGGGAGTGTGCCGCGCAATTGACACGTGTGGCCAAGCAAACAGGTGTAACCATTTTGTTGGTGGGGCATG
TGACCAAAGATGGCGCCATTGCAGGACCTCGTGTGTTAGAGCATATGGTGGATGCGGTTTTGTATTTTGAAGGCGATACG
CACAGTAATTATCGTATGATACGAGCCATTAAAAACCGTTTTGGTGCTGCCAATGAGCTCGGTGTGTTTGCGATGACGGA
CAAAGGTTTGAAAGGTGTGGCAAACCCATCAGCGATTTTTTTGGCGTCTTATCGGGATGATGTCCCTGGTTCTTGTGTAT
TGGTCACGCAAGAAGGCAGTCGTCCATTATTGGTAGAAATTCAAGCTTTGGTAGACGATGCACATGGTTTCACACCCAAA
CGCCTGACTGTAGGCTTGGAGCAAAATCGTTTGGCGATGCTATTGGCCGTCCTCAATCGCCATGCAGGCATTGCTTGTTT
TGATCAAGATGTGTTTTTGAATGCGGTGGGTGGCGTTAAAATCATGGAGCCTGCTGCTGACTTGGCAGTGATTTTGGCCA
TGGTCTCTAGCCATCGCAATCGACCTTTGCCGCAAAAAATGATTGTGTTTGGTGAAATAGGTTTGTCAGGCGAGGTGCGT
CCTGTATCTCGTGGGCAAGAGCGTTTGAAAGAGGCTGAGAAATTGGGTTTTACCCATGCCATCATTCCCAAAGCCAATTT
GCCGCGTCAAAAAAGTGATTTTCCCCAACTAACCCTACATGGGGTATCTTCTATCCAAGAAGCTGTTGAAATTTGTCGTC
GCGACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.276

94.725

0.486
  radA Streptococcus pneumoniae Rx1

46.903

99.341

0.466
  radA Streptococcus pneumoniae R6

46.903

99.341

0.466
  radA Streptococcus pneumoniae TIGR4

46.903

99.341

0.466
  radA Streptococcus pneumoniae D39

46.903

99.341

0.466
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466
  radA Streptococcus mitis SK321

46.785

99.121

0.464