Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LVJ81_RS07370 Genome accession   NZ_CP091512
Coordinates   1516076..1517035 (+) Length   319 a.a.
NCBI ID   WP_019959057.1    Uniprot ID   A0A6M4CAE6
Organism   Vitreoscilla stercoraria strain SAG 1488-6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1511076..1522035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ81_RS07355 (LVJ81_07355) vhb 1512079..1512519 (-) 441 WP_019959060.1 hemoglobin Vhb -
  LVJ81_RS07360 (LVJ81_07360) - 1512754..1513539 (-) 786 WP_019959059.1 hypothetical protein -
  LVJ81_RS07365 (LVJ81_07365) - 1513750..1515756 (+) 2007 WP_026353656.1 TonB-dependent receptor -
  LVJ81_RS07370 (LVJ81_07370) ceuB 1516076..1517035 (+) 960 WP_019959057.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  LVJ81_RS07375 (LVJ81_07375) - 1517022..1517975 (+) 954 WP_019959056.1 iron chelate uptake ABC transporter family permease subunit -
  LVJ81_RS07380 (LVJ81_07380) - 1517966..1518730 (+) 765 WP_019959055.1 ATP-binding cassette domain-containing protein -
  LVJ81_RS07385 (LVJ81_07385) - 1518746..1519726 (+) 981 WP_019959054.1 ABC transporter substrate-binding protein -
  LVJ81_RS07390 (LVJ81_07390) - 1519801..1520745 (-) 945 WP_019959053.1 hypothetical protein -
  LVJ81_RS07395 (LVJ81_07395) - 1520788..1521222 (-) 435 WP_019959052.1 OsmC family protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 34394.23 Da        Isoelectric Point: 9.9609

>NTDB_id=651909 LVJ81_RS07370 WP_019959057.1 1516076..1517035(+) (ceuB) [Vitreoscilla stercoraria strain SAG 1488-6]
MLKLRFLLPLTFLLGITSIFIGVGNVSLSGLLAGRPEDWLLFTQSRLPRLLSILIAGASLSVSGLILQSLSRNRFVSPTT
AGLEDSARFGVLLALIMLPAATGWLQTSLAIATTFVGALIFMAILNTLKHRDTVFVPLVGMMFGNIISAITVFFALQFDL
LQNINAWLQGDFSSVLSGRYETLFLSVPALIFAYLYAQRFVLAGMGEDFATNLGLNYKRTLNLGLALVSIVTAVVIVTVG
SIPFLGLIVPNLVALYLGDNLKLTLPHTAVVGALLVLVCDIIGRVVIYPYEISVSLMMGVIGSAVFLAMLLKRYRHGGI

Nucleotide


Download         Length: 960 bp        

>NTDB_id=651909 LVJ81_RS07370 WP_019959057.1 1516076..1517035(+) (ceuB) [Vitreoscilla stercoraria strain SAG 1488-6]
ATGTTGAAACTGCGTTTTTTACTTCCGCTTACCTTCTTACTTGGCATAACATCCATTTTCATTGGTGTGGGCAATGTCAG
CTTATCGGGTTTGCTGGCGGGGCGGCCTGAAGATTGGCTTTTATTCACCCAAAGCCGCTTGCCACGCTTATTGTCCATTC
TCATTGCAGGCGCAAGCTTAAGCGTTTCTGGTTTGATTTTACAAAGTTTAAGCCGCAACCGCTTTGTCTCGCCCACCACC
GCAGGCTTAGAAGATTCGGCAAGGTTCGGTGTCTTACTCGCCTTAATTATGTTACCCGCTGCCACAGGCTGGTTGCAAAC
ATCTTTGGCAATCGCCACTACCTTCGTCGGTGCTTTGATTTTCATGGCCATTTTAAACACCTTAAAACACCGTGATACAG
TTTTTGTGCCTTTGGTTGGCATGATGTTTGGTAACATCATCAGCGCTATTACGGTATTTTTTGCCTTGCAATTTGATTTG
CTGCAAAACATCAATGCTTGGCTACAAGGCGACTTTTCCAGCGTTTTGAGCGGTCGCTACGAAACCTTGTTTTTAAGCGT
ACCTGCTTTGATTTTTGCTTATTTGTATGCACAACGTTTTGTACTGGCAGGTATGGGCGAAGACTTTGCGACCAATTTGG
GTTTGAATTACAAACGCACACTCAATTTGGGTTTGGCATTGGTGTCCATTGTCACCGCAGTGGTCATCGTCACAGTCGGC
TCCATTCCGTTTTTGGGCTTGATTGTTCCCAATTTGGTGGCTTTGTATTTGGGCGATAATTTGAAGCTGACTTTGCCGCA
TACAGCGGTGGTGGGTGCTTTGTTGGTATTGGTGTGTGACATCATTGGTCGGGTGGTGATTTATCCCTATGAAATTTCAG
TCAGCTTGATGATGGGCGTGATTGGCAGCGCTGTATTCTTAGCCATGTTACTCAAGAGGTACCGTCATGGCGGAATCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M4CAE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.211

99.373

0.489