Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LVJ82_RS13260 Genome accession   NZ_CP091511
Coordinates   2598681..2600048 (+) Length   455 a.a.
NCBI ID   WP_058357886.1    Uniprot ID   -
Organism   Vitreoscilla massiliensis strain SN4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2593681..2605048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ82_RS13230 (LVJ82_13230) - 2594553..2595218 (+) 666 WP_244796687.1 hypothetical protein -
  LVJ82_RS13240 (LVJ82_13240) - 2595249..2595710 (+) 462 WP_058357890.1 type IV pilin protein -
  LVJ82_RS13245 (LVJ82_13245) hpnD 2595786..2596637 (+) 852 WP_058357889.1 presqualene diphosphate synthase HpnD -
  LVJ82_RS13250 (LVJ82_13250) hpnE 2596634..2597938 (+) 1305 WP_058357888.1 hydroxysqualene dehydroxylase HpnE -
  LVJ82_RS13255 (LVJ82_13255) - 2597935..2598663 (+) 729 WP_058357887.1 SDR family oxidoreductase -
  LVJ82_RS13260 (LVJ82_13260) radA 2598681..2600048 (+) 1368 WP_058357886.1 DNA repair protein RadA Machinery gene
  LVJ82_RS13265 (LVJ82_13265) - 2600161..2602254 (+) 2094 WP_234333111.1 ATP-binding protein -
  LVJ82_RS13270 (LVJ82_13270) - 2602538..2603068 (-) 531 WP_058358103.1 alpha-ketoglutarate-dependent dioxygenase AlkB -
  LVJ82_RS13275 (LVJ82_13275) - 2603191..2603673 (-) 483 WP_058357884.1 DUF4442 domain-containing protein -
  LVJ82_RS13280 (LVJ82_13280) - 2603676..2604560 (-) 885 WP_058357883.1 folate-binding protein YgfZ -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49178.48 Da        Isoelectric Point: 6.8119

>NTDB_id=651896 LVJ82_RS13260 WP_058357886.1 2598681..2600048(+) (radA) [Vitreoscilla massiliensis strain SN4]
MAKVKTQYQCSECGGTTPKWAGQCPHCGQWNTLQENAILPASNNRFDAWSQTSSKVQNLAEVTAEEVPRSTTGLTELDRV
LGGGLVEGAVVLLGGDPGIGKSTLLLQATALMGADRSCLYVSGEESAQQVALRAQRLSLHPEHINLLAEIRLEAIVQMLK
ERQPKVAVIDSIQTLYSDQITSAPGSVSQVRECAAQLTRVAKQQGITILLVGHVTKDGAIAGPRVLEHMVDAVLYFEGDS
HSNYRMIRAIKNRFGAANELGVFAMTDKGLKGVANPSAIFLASYRDDVPGSCVLVTQEGSRPLLVEIQALVDDAHGFTPK
RLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKIMEPAADLAVILAMLSSYRNKPLPEKMIAFGEIGLSGEVR
PVSRGQERLKEAEKLGFTHAIVPKANLPRHQQDFPQLTLYGVSSLQEAVDICRRD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=651896 LVJ82_RS13260 WP_058357886.1 2598681..2600048(+) (radA) [Vitreoscilla massiliensis strain SN4]
ATGGCCAAAGTCAAAACCCAATACCAGTGCAGTGAATGTGGCGGTACTACCCCAAAATGGGCAGGGCAATGTCCGCATTG
TGGGCAATGGAATACCTTGCAAGAAAATGCCATCTTGCCCGCCAGCAACAACCGTTTTGATGCGTGGAGCCAAACCAGCA
GCAAGGTACAAAACTTGGCCGAAGTCACTGCCGAAGAAGTGCCACGTTCTACAACAGGTTTGACCGAGTTGGATCGGGTG
TTGGGCGGTGGCTTGGTTGAGGGCGCGGTGGTGTTATTGGGTGGCGACCCGGGCATAGGCAAATCGACATTGTTGTTGCA
GGCAACGGCCTTAATGGGCGCTGACCGATCTTGCTTGTATGTGTCGGGCGAGGAGTCGGCGCAGCAAGTGGCATTGCGCG
CTCAGCGCTTGTCGCTGCATCCTGAGCACATCAATTTATTGGCCGAAATCCGTCTTGAAGCCATTGTGCAAATGCTGAAA
GAGCGCCAGCCCAAAGTGGCGGTCATCGATTCGATACAAACACTGTATTCAGACCAAATCACCTCGGCACCCGGTTCGGT
ATCGCAAGTGCGTGAATGTGCGGCGCAATTGACACGGGTGGCCAAGCAGCAAGGCATCACTATCTTACTGGTCGGCCACG
TCACCAAAGACGGTGCCATAGCCGGCCCACGGGTGTTGGAGCACATGGTCGATGCGGTGTTGTATTTTGAAGGCGACAGC
CACAGCAATTACCGCATGATACGCGCGATTAAAAACCGTTTTGGCGCCGCCAATGAATTGGGCGTGTTTGCAATGACGGA
CAAAGGCTTAAAAGGCGTGGCCAATCCATCGGCCATTTTCTTGGCCTCGTACCGCGATGATGTGCCCGGCTCGTGTGTGT
TGGTCACGCAAGAAGGCTCACGGCCTTTGTTGGTGGAAATCCAAGCACTGGTCGACGATGCGCATGGCTTCACCCCTAAA
CGCTTGACCGTCGGTCTGGAGCAAAACCGTTTGGCGATGTTGTTGGCCGTGCTCAATCGCCATGCAGGCATTGCCTGTTT
TGACCAAGATGTGTTTCTCAATGCCGTCGGTGGCGTCAAAATCATGGAGCCTGCGGCCGACTTGGCGGTGATATTGGCGA
TGTTGTCCAGCTACCGCAACAAACCATTGCCTGAGAAAATGATAGCCTTTGGTGAAATCGGTTTATCGGGCGAGGTCAGA
CCGGTGTCGCGCGGACAAGAGCGTCTTAAAGAAGCGGAAAAATTGGGCTTTACCCACGCCATCGTGCCCAAAGCCAATTT
GCCGCGCCATCAACAAGATTTCCCTCAACTGACACTTTATGGTGTGTCATCTTTGCAAGAAGCTGTGGACATTTGTCGCC
GCGATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-218)

Subunit ChlI of Mg-chelatase (ChlI)

(363-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.559

99.78

0.495
  radA Streptococcus pneumoniae Rx1

46.916

99.78

0.468
  radA Streptococcus pneumoniae D39

46.916

99.78

0.468
  radA Streptococcus pneumoniae TIGR4

46.916

99.78

0.468
  radA Streptococcus pneumoniae R6

46.916

99.78

0.468
  radA Streptococcus mitis NCTC 12261

46.916

99.78

0.468
  radA Streptococcus mitis SK321

46.993

98.681

0.464