Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LVJ86_RS09390 Genome accession   NZ_CP091510
Coordinates   2027177..2027644 (-) Length   155 a.a.
NCBI ID   WP_047761433.1    Uniprot ID   A0A0J0YQX0
Organism   Neisseria arctica strain KH1503     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2022177..2032644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ86_RS09365 (LVJ86_09365) dnaN 2022933..2024036 (+) 1104 WP_047761430.1 DNA polymerase III subunit beta -
  LVJ86_RS09370 (LVJ86_09370) - 2024330..2024860 (-) 531 WP_047761431.1 hypothetical protein -
  LVJ86_RS09385 (LVJ86_09385) - 2025532..2026923 (+) 1392 WP_047761432.1 3'-5' exonuclease -
  LVJ86_RS09390 (LVJ86_09390) recX 2027177..2027644 (-) 468 WP_047761433.1 recombination regulator RecX Regulator
  LVJ86_RS09395 (LVJ86_09395) - 2027672..2028388 (-) 717 WP_047761434.1 phosphoglycolate phosphatase -
  LVJ86_RS09400 (LVJ86_09400) - 2028512..2029729 (-) 1218 WP_047761435.1 aspartate kinase -
  LVJ86_RS09405 (LVJ86_09405) rph 2029999..2030727 (-) 729 WP_047761436.1 ribonuclease PH -
  LVJ86_RS09410 (LVJ86_09410) - 2030886..2031761 (+) 876 WP_235284615.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 18275.90 Da        Isoelectric Point: 9.7892

>NTDB_id=651872 LVJ86_RS09390 WP_047761433.1 2027177..2027644(-) (recX) [Neisseria arctica strain KH1503]
MKSEKSLRSRAMDILSRREVSRLELKRKLMPYAQSEEELEAVLNEFAERRWQSDERYAEAYVHSKRNRYGSLRIKQALSA
KGVDEATVRELMPDKAGELATAVDLLHKKFKRPGLDLKEKQKQVRFLAYRGFSMDMIQTAMKNAWDENSEIFDWE

Nucleotide


Download         Length: 468 bp        

>NTDB_id=651872 LVJ86_RS09390 WP_047761433.1 2027177..2027644(-) (recX) [Neisseria arctica strain KH1503]
ATGAAATCCGAAAAATCACTACGTAGTCGTGCGATGGATATTCTTTCTCGTCGTGAAGTCAGCCGCCTTGAGTTGAAGCG
AAAATTAATGCCGTATGCGCAAAGTGAGGAAGAATTGGAGGCTGTATTAAACGAATTTGCTGAGCGTCGCTGGCAGTCTG
ACGAACGTTATGCCGAAGCTTATGTGCATAGTAAGCGCAATCGTTATGGTAGTTTGCGGATAAAGCAGGCACTATCGGCC
AAAGGCGTGGATGAGGCAACCGTGCGGGAATTAATGCCGGATAAGGCGGGGGAGTTGGCTACGGCGGTCGATCTGTTACA
TAAAAAATTCAAGCGGCCCGGATTAGATTTGAAAGAGAAGCAAAAACAGGTACGCTTTTTAGCTTATCGCGGATTTAGTA
TGGATATGATTCAGACTGCCATGAAAAATGCTTGGGATGAAAACAGTGAAATATTTGATTGGGAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(35-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0YQX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

67.333

96.774

0.652