Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   LVJ86_RS06355 Genome accession   NZ_CP091510
Coordinates   1382243..1384282 (-) Length   679 a.a.
NCBI ID   WP_047760226.1    Uniprot ID   A0A0J0YUE9
Organism   Neisseria arctica strain KH1503     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1377243..1389282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ86_RS06340 (LVJ86_06340) - 1378189..1379514 (+) 1326 WP_047760223.1 hypothetical protein -
  LVJ86_RS06345 (LVJ86_06345) gltS 1379850..1381103 (+) 1254 WP_047760224.1 sodium/glutamate symporter -
  LVJ86_RS06350 (LVJ86_06350) - 1381339..1382172 (+) 834 WP_047760225.1 outer membrane beta-barrel protein -
  LVJ86_RS06355 (LVJ86_06355) recG 1382243..1384282 (-) 2040 WP_047760226.1 ATP-dependent DNA helicase RecG Machinery gene
  LVJ86_RS06360 (LVJ86_06360) - 1384396..1385271 (-) 876 WP_047760227.1 chorismate mutase -
  LVJ86_RS06365 (LVJ86_06365) - 1385485..1387602 (+) 2118 WP_053008290.1 AsmA family protein -
  LVJ86_RS06370 (LVJ86_06370) - 1387756..1388325 (+) 570 WP_047760228.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 75471.17 Da        Isoelectric Point: 7.7093

>NTDB_id=651868 LVJ86_RS06355 WP_047760226.1 1382243..1384282(-) (recG) [Neisseria arctica strain KH1503]
MNADTQKQLKITENTAKKLDKLNIRSVWDAVLHLPLRYEDETHITPIADARPGVPCQVEGEVVHQEVQFRPRRQLIVQMR
DGSGSVLFLRFIHFYPSHQKQMAEGKRIRAVGEIKQGFFGSEMIHPKIRDAKSSGLAESLTPVYPTVNGLNQPTLRRIIQ
TALDVTPLQDTLPDDLLGRLKLPHLTESLRLLHFPPPDYTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRISGSAK
ALLGSGELSAKLLNSLPFSLTGAQQRVLDEIRHDMAQTFPMHRLLQGDVGSGKTIVAALSALVAIEAGYQVAVMAPTEIL
AEQHYIKFKQWLEPLGLSVAWLSGSLRKKAKDAAKTALENGETLLAVGTHALFQEDVRFQNLGLVIVDEQHRFGVAQRLA
LKNKGEDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPNRTPIKTRLVNSLRRAEVESFVLSTCLKGQQAYWVCPLIE
ESETLQLQTATETLTQLQTALPQLNIGLVHGRMKAAEKAAVMAEFSAGRLNVLVATTVIEVGVDVPNASLMVIEHAERMG
LAQLHQLRGRVGRGAAASACVLLFSEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFADLQED
LHLLETARNIAPQLIDERPDIVEAHLNRWLSSREQYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=651868 LVJ86_RS06355 WP_047760226.1 1382243..1384282(-) (recG) [Neisseria arctica strain KH1503]
ATGAATGCCGATACGCAGAAACAGCTTAAAATTACCGAAAATACAGCTAAAAAACTCGATAAACTGAATATCCGCAGCGT
TTGGGATGCGGTGTTGCACCTGCCTTTGCGTTATGAAGACGAAACCCATATCACCCCGATTGCCGATGCGCGCCCCGGTG
TGCCTTGCCAGGTGGAAGGAGAGGTAGTGCATCAAGAGGTACAGTTCAGGCCGCGCCGGCAACTGATTGTTCAGATGCGC
GACGGATCCGGCAGCGTATTGTTTTTGCGTTTTATCCATTTTTACCCCAGTCATCAAAAGCAAATGGCCGAAGGCAAGCG
TATCCGTGCGGTGGGTGAAATCAAACAAGGCTTTTTCGGCAGCGAGATGATACATCCGAAGATACGTGATGCCAAAAGCA
GTGGTTTGGCAGAAAGCCTTACCCCTGTTTATCCGACCGTAAACGGCTTAAACCAGCCTACCTTGCGCCGTATTATTCAG
ACGGCATTAGACGTTACGCCGTTGCAAGATACCTTGCCTGACGACTTGTTAGGCCGTTTGAAACTGCCGCATTTGACCGA
AAGCTTACGGTTATTGCACTTCCCGCCGCCCGATTACACGATTCACCAACTTTCAGACGGCACTTTGCCTGCGTGGCAAC
GGCTGAAATTCGACGAACTGCTGGCGCAGCAGCTTTCTATGCGTTTGGCACGGCAAAAGCGTATCAGCGGCAGTGCCAAA
GCTTTGCTGGGCAGCGGCGAACTATCTGCAAAATTGTTAAACAGCCTGCCTTTCTCCCTTACCGGCGCACAACAGCGCGT
ATTGGATGAAATCCGCCACGATATGGCGCAAACCTTTCCCATGCACCGGCTTTTACAAGGAGACGTGGGCAGCGGTAAAA
CGATTGTGGCCGCATTATCCGCGCTTGTCGCGATTGAAGCGGGCTACCAAGTGGCGGTGATGGCGCCCACTGAAATTTTG
GCGGAGCAGCACTATATCAAATTCAAACAATGGCTTGAACCTTTGGGTTTGAGCGTGGCATGGCTATCGGGCAGCCTGCG
TAAAAAAGCCAAAGATGCGGCTAAAACCGCCTTGGAAAACGGCGAAACCTTGTTGGCAGTCGGCACGCATGCCTTGTTTC
AAGAAGACGTGCGCTTTCAAAATCTCGGCTTGGTGATTGTGGACGAACAGCACCGCTTCGGCGTGGCGCAACGTTTGGCT
TTAAAAAATAAAGGTGAAGACGTACACCAACTGATGATGTCGGCTACGCCTATCCCGCGGACATTGGCAATGAGTTTTTT
TGCTGATTTGGACGTATCCGTTATCGACGAACTGCCGCCTAACCGAACACCGATTAAAACGCGGCTTGTGAACAGCTTGC
GCCGCGCAGAAGTAGAGAGCTTCGTATTATCCACTTGTTTGAAAGGGCAGCAGGCCTATTGGGTATGCCCGCTGATTGAA
GAAAGCGAAACGCTGCAACTGCAAACCGCTACCGAAACCTTAACCCAACTTCAGACGGCCTTGCCGCAACTGAACATAGG
TTTGGTACACGGACGTATGAAAGCTGCCGAAAAAGCCGCCGTGATGGCTGAATTTTCGGCAGGCCGTCTGAATGTTTTGG
TGGCGACTACTGTAATCGAAGTCGGCGTAGACGTGCCTAATGCCAGCCTGATGGTGATAGAGCATGCGGAACGCATGGGG
TTGGCGCAACTGCATCAATTACGCGGGCGGGTAGGGCGCGGTGCCGCAGCCAGTGCGTGCGTATTGCTGTTTTCCGAACC
CTTGAGCGAATTGGCCAAAGCCCGTTTGAAAGTGATTTACGAGCATACGGACGGTTTTGAAATCGCGCGGCAGGATTTGA
ACATACGCGGGCCGGGTGAGTTTCTCGGCGCGCGGCAGAGCGGCGTACCCATGTTGCGCTTTGCCGATTTGCAGGAAGAC
CTGCATCTTTTGGAAACGGCGCGCAATATCGCTCCGCAATTGATAGACGAACGCCCCGATATTGTCGAAGCCCACCTTAA
CCGGTGGTTATCCAGTAGAGAGCAGTATTTGGGCGTATAG

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(282-418)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-665)

RecG wedge domain (RecG_wedge)

(11-163)

Helicase conserved C-terminal domain (Helicase_C)

(467-574)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0YUE9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

82.622

100

0.826