Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   LVJ86_RS05905 Genome accession   NZ_CP091510
Coordinates   1291533..1293266 (-) Length   577 a.a.
NCBI ID   WP_047760146.1    Uniprot ID   -
Organism   Neisseria arctica strain KH1503     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1286533..1298266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ86_RS05870 (LVJ86_05870) - 1286712..1287329 (-) 618 WP_047760267.1 lytic transglycosylase domain-containing protein -
  LVJ86_RS05875 (LVJ86_05875) pyrC 1287457..1288500 (-) 1044 WP_047760141.1 dihydroorotase -
  LVJ86_RS05880 (LVJ86_05880) - 1288535..1289128 (-) 594 WP_047760142.1 hypothetical protein -
  LVJ86_RS05885 (LVJ86_05885) - 1289141..1289365 (-) 225 WP_047760143.1 sulfurtransferase TusA family protein -
  LVJ86_RS05890 (LVJ86_05890) - 1289521..1290126 (+) 606 WP_047760144.1 CNP1-like family protein -
  LVJ86_RS05895 (LVJ86_05895) - 1290180..1290947 (+) 768 WP_047760145.1 sulfite exporter TauE/SafE family protein -
  LVJ86_RS05900 (LVJ86_05900) cueR 1290957..1291349 (+) 393 WP_075968067.1 Cu(I)-responsive transcriptional regulator -
  LVJ86_RS05905 (LVJ86_05905) recD 1291533..1293266 (-) 1734 WP_047760146.1 exodeoxyribonuclease V subunit alpha Machinery gene
  LVJ86_RS05910 (LVJ86_05910) bfr 1293525..1293998 (-) 474 WP_047760147.1 bacterioferritin -
  LVJ86_RS05915 (LVJ86_05915) bfr 1294024..1294488 (-) 465 WP_047760148.1 bacterioferritin -
  LVJ86_RS05920 (LVJ86_05920) typA 1294887..1296698 (+) 1812 WP_047760149.1 translational GTPase TypA -
  LVJ86_RS05925 (LVJ86_05925) bioF 1296939..1298093 (+) 1155 WP_047760150.1 8-amino-7-oxononanoate synthase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 63588.92 Da        Isoelectric Point: 5.9464

>NTDB_id=651867 LVJ86_RS05905 WP_047760146.1 1291533..1293266(-) (recD) [Neisseria arctica strain KH1503]
MTGEVLQIDPNRAAAEAVADLLMRRSPEMAGKVLPYLPRLFSALSDGHAFIWLNDEEAEELSQAFPIVGNSGNTPLILEG
RRLFIGRIWQLEYDLAREIVRLAKSEIAPVDWMQAAQLLSDWFIRPGSEGQRDAATLALLKPFMLISGGPGTGKTTTVAK
LLGLLCSGISALPRIALAAPTGKAAAHMARALYRALDDFELSEKVRNHLLQLEGQTVHRLLKLRPPQMAPQFNADQPLPL
DILVVDEASMLDIALLRQLLAAVPSGCRVILLGDENQLPSVGAGAVLAQLAQPTILSGETAQLLQNMLPQHGFQTASQPQ
PLSENIARLLVSHRFGENSGIGNLARSVVAEDADKAWAQFERHPEVLSARQGTSRLQAEELYELQKDYWAAVDEGNVAKA
FARQTDAVVLAAWRDDAIEFNATYRRCLAKYGRVRTDTSWFAGQILMVERNDYSLGVFNGDIGLVMPDENNRLSAWFASA
DGYRQIALSRLPATVEAFAMTVHKSQGSEYRDVWLLLPSVTLLSENGAGLNKALLYTAITRARERFVFWGEEAAFKRACV
LNEPRRSALREMIGRLY

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=651867 LVJ86_RS05905 WP_047760146.1 1291533..1293266(-) (recD) [Neisseria arctica strain KH1503]
ATGACAGGCGAAGTTTTACAGATAGACCCTAACCGCGCGGCAGCGGAAGCCGTAGCCGATTTACTGATGCGCCGCAGTCC
CGAAATGGCCGGCAAAGTGTTGCCGTATCTGCCGCGTTTGTTTTCTGCACTTTCAGACGGCCATGCTTTTATTTGGTTGA
ATGACGAGGAGGCGGAAGAGCTTTCCCAGGCATTTCCGATTGTGGGTAACAGCGGCAATACGCCGCTGATTTTGGAGGGG
CGTCGGCTGTTTATCGGCAGAATCTGGCAGCTTGAATACGATTTGGCCAGAGAGATTGTACGTTTGGCTAAGTCTGAAAT
TGCGCCGGTGGATTGGATGCAAGCGGCACAATTGTTATCCGATTGGTTTATACGTCCGGGTAGTGAAGGGCAGAGGGACG
CGGCTACTTTGGCGTTGCTGAAGCCGTTTATGTTGATTAGCGGTGGCCCGGGTACGGGCAAAACCACTACGGTGGCAAAA
TTGTTGGGCTTGTTGTGCAGCGGTATTTCTGCTTTGCCGCGCATCGCATTGGCGGCGCCCACGGGTAAAGCCGCGGCACA
CATGGCGCGCGCTTTATACAGAGCTTTGGATGATTTCGAGTTGTCGGAAAAAGTGCGTAATCATCTGCTTCAGTTAGAAG
GCCAAACCGTACACCGTTTATTAAAATTGCGCCCTCCGCAGATGGCGCCGCAATTTAATGCCGACCAACCGCTGCCTTTG
GATATTTTGGTTGTAGACGAAGCCTCTATGCTTGATATCGCTTTGTTGCGCCAGCTGTTGGCTGCCGTTCCCAGCGGTTG
CCGTGTGATATTGTTAGGAGATGAAAACCAATTGCCTTCGGTAGGTGCAGGGGCTGTGTTGGCGCAGTTGGCACAACCCA
CCATATTAAGCGGCGAGACTGCACAACTATTGCAGAACATGTTGCCGCAACACGGTTTTCAGACGGCCTCTCAGCCGCAG
CCTTTATCGGAAAATATCGCCCGCTTGTTGGTAAGCCACCGTTTTGGCGAAAACAGTGGAATCGGCAATTTGGCACGTTC
GGTAGTGGCGGAAGATGCCGACAAAGCTTGGGCTCAGTTTGAACGTCATCCCGAAGTATTGTCGGCAAGGCAGGGGACGA
GCCGTTTGCAAGCCGAAGAACTGTATGAATTACAGAAGGACTATTGGGCAGCTGTAGACGAAGGTAATGTGGCCAAAGCA
TTTGCCCGTCAAACTGATGCGGTTGTATTGGCTGCGTGGCGTGATGATGCGATCGAATTTAATGCAACCTATCGCCGCTG
CTTGGCGAAATACGGGCGGGTGCGGACCGATACATCATGGTTTGCAGGGCAGATATTGATGGTGGAGCGCAATGATTACA
GTTTGGGTGTGTTTAACGGTGATATCGGATTGGTGATGCCTGATGAAAATAATCGCTTAAGCGCTTGGTTTGCTTCGGCA
GACGGATATCGTCAGATTGCCTTGAGCCGCTTGCCTGCAACCGTTGAAGCATTTGCGATGACGGTACATAAAAGCCAAGG
TTCGGAATACCGCGATGTTTGGCTGCTGCTGCCTTCCGTAACTTTATTGTCCGAGAATGGGGCGGGGTTGAACAAAGCCT
TGCTTTATACTGCTATTACACGGGCGCGTGAAAGATTTGTTTTTTGGGGAGAGGAGGCGGCCTTTAAGCGTGCTTGTGTT
TTGAACGAACCGCGCCGTAGTGCTTTGCGTGAAATGATAGGGCGTTTGTATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(128-293)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(497-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

56.434

94.281

0.532