Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LVJ86_RS03945 Genome accession   NZ_CP091510
Coordinates   885952..888180 (+) Length   742 a.a.
NCBI ID   WP_047760634.1    Uniprot ID   -
Organism   Neisseria arctica strain KH1503     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 880952..893180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ86_RS03930 (LVJ86_03930) galU 882493..883365 (+) 873 WP_047760565.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LVJ86_RS03935 (LVJ86_03935) dsbD 883518..885305 (-) 1788 WP_047760564.1 protein-disulfide reductase DsbD -
  LVJ86_RS03940 (LVJ86_03940) - 885374..885706 (-) 333 WP_235284587.1 rhodanese-like domain-containing protein -
  LVJ86_RS03945 (LVJ86_03945) comA 885952..888180 (+) 2229 WP_047760634.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LVJ86_RS03950 (LVJ86_03950) - 888287..890347 (-) 2061 WP_047760562.1 LysM peptidoglycan-binding domain-containing protein -
  LVJ86_RS03955 (LVJ86_03955) - 890536..891240 (+) 705 WP_235284586.1 methyltransferase domain-containing protein -
  LVJ86_RS03960 (LVJ86_03960) - 891319..892002 (+) 684 WP_047760561.1 NAD-dependent deacylase -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 82141.84 Da        Isoelectric Point: 9.9763

>NTDB_id=651860 LVJ86_RS03945 WP_047760634.1 885952..888180(+) (comA) [Neisseria arctica strain KH1503]
MVFGKILPFWVTGVVVSFALPTAEAWLILVMVLLLFAMVWQFPKLLLPLFFVSGIAYGVWRTQNSLSAQWPLEAQQVRLS
VTVTDLPQKDENRVRLRVEAIDEKGRSYRLQLSDYQLRDWPVGSRWLINARVRPPIGEVNTVGFNREAWALANRINGIGT
VGKWRESLGQSASIPIQKLREAISLNWQGDSHSMVFSDGRALMRALGIGEQGALSIRLWQVFRPLGLSHLVSISGLHVGM
VAFWAGWLLKKLLYILPYTPARPKAWILAAGVSTGLAYAALAGFSIPTQRSILMLFAFAWAWWRGSGCSVWQGWWQALAM
VLLIEPSAVLDNGFWLSFGLVAALLWISFGRNRKYISGWRLAVDGQLAVTVLSVIVLGVLFSSVPIISPLVNAVAIPWFS
WILVPLALLASLLPWPPLQWLAAAAGEYTLQVLAKLAEYAPEYTIAAAPWPLVVLAVIAAGLVLLPRGLGLKPFALIVLL
GFLVYKPPMLEKEHLKATVWDVGQGLSVLLQTRNHSLLFDTGTEAAANMAVVPSLNAAGVKRLDGLVLSHHDVDHDGGFT
ILAKAKQPDVVWAGQPEFYPNVRHCEEQAWQWDGVRFEFLRAAAMSGKEHDNDQSCILRVLVGHQALLLTGDLSQAGEQA
LVNHYGKSLYSQVLLLGHHGSNSSSSGTFLNVVSPVYAVASSGYANPYQHPSKAVRNRIRAHDARLLRTDLSGGLWFELD
NEGIRQGRLKIWKPYWQKKPFE

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=651860 LVJ86_RS03945 WP_047760634.1 885952..888180(+) (comA) [Neisseria arctica strain KH1503]
CTGGTGTTCGGCAAAATATTACCCTTTTGGGTAACCGGTGTAGTGGTTTCATTTGCTTTGCCAACGGCTGAGGCATGGTT
GATATTGGTTATGGTGTTACTGCTATTCGCAATGGTTTGGCAATTTCCTAAGTTATTGCTACCGTTGTTTTTTGTATCGG
GTATAGCTTACGGGGTATGGAGAACCCAGAACAGTTTGTCCGCACAGTGGCCGTTGGAGGCGCAGCAGGTGCGATTATCC
GTTACAGTAACCGATTTGCCTCAGAAGGATGAAAACAGGGTACGTTTGCGGGTGGAGGCAATAGATGAAAAAGGCCGCAG
CTACCGTTTGCAATTGTCTGATTATCAGTTGAGGGATTGGCCGGTCGGTAGCCGTTGGCTGATTAATGCAAGAGTCCGGC
CGCCAATAGGAGAGGTAAATACGGTAGGGTTTAATCGTGAAGCGTGGGCATTGGCAAACCGTATCAACGGCATAGGAACA
GTAGGCAAGTGGCGGGAAAGCTTGGGGCAAAGTGCAAGTATACCCATACAAAAACTTCGTGAAGCCATTAGTTTGAATTG
GCAAGGCGACAGCCATTCGATGGTGTTTTCAGACGGCAGGGCGCTGATGCGGGCTTTGGGTATCGGAGAACAAGGGGCAT
TAAGTATTAGGCTCTGGCAGGTATTCAGGCCGCTGGGGTTAAGCCATCTGGTCAGTATTTCGGGCTTGCATGTGGGTATG
GTGGCGTTTTGGGCGGGTTGGCTGTTAAAAAAGTTACTATACATTTTGCCTTATACGCCTGCCAGACCTAAAGCATGGAT
ACTCGCTGCCGGAGTGTCTACGGGTTTGGCATACGCAGCTTTGGCGGGATTCTCTATTCCTACCCAACGCAGTATATTGA
TGTTGTTCGCTTTTGCATGGGCGTGGTGGCGGGGTAGCGGCTGTTCGGTGTGGCAGGGCTGGTGGCAGGCTTTGGCAATG
GTTTTGCTGATTGAACCTTCGGCTGTATTAGATAACGGTTTTTGGCTCTCTTTCGGTTTGGTAGCTGCCTTACTGTGGAT
ATCGTTCGGGCGCAACCGTAAATATATTTCCGGTTGGCGGTTGGCTGTGGATGGCCAATTGGCTGTGACTGTATTATCAG
TAATCGTTTTAGGCGTTTTGTTTTCTTCTGTGCCTATTATCAGCCCCTTGGTGAATGCTGTAGCAATTCCTTGGTTTTCA
TGGATTTTGGTGCCTTTGGCCTTGTTGGCTTCTTTGTTACCTTGGCCGCCGTTGCAATGGCTGGCGGCTGCGGCAGGCGA
GTATACCCTGCAGGTATTGGCAAAGCTCGCTGAATATGCGCCTGAATATACGATTGCTGCCGCTCCGTGGCCCTTAGTCG
TATTGGCTGTTATAGCGGCAGGATTGGTATTGTTGCCGCGCGGATTGGGGCTGAAACCTTTTGCTTTGATCGTATTGTTA
GGTTTCCTCGTTTATAAGCCGCCCATGTTGGAGAAAGAGCATCTGAAAGCGACCGTATGGGATGTCGGGCAAGGATTATC
CGTATTGTTGCAAACCCGCAATCATAGCTTGTTGTTCGATACGGGTACGGAAGCGGCAGCCAATATGGCAGTAGTGCCAA
GCTTGAATGCGGCTGGGGTAAAGCGTTTGGATGGATTGGTATTGTCTCATCATGATGTGGATCATGATGGTGGTTTTACG
ATATTGGCTAAAGCTAAACAACCTGATGTTGTTTGGGCGGGACAGCCCGAATTTTATCCGAATGTCCGACATTGCGAGGA
ACAAGCTTGGCAATGGGACGGAGTACGGTTTGAATTCTTGAGAGCGGCGGCGATGTCCGGCAAGGAGCATGATAACGACC
AAAGCTGTATTTTGCGTGTGTTGGTTGGTCATCAAGCATTGTTGCTGACGGGAGATTTAAGTCAGGCAGGTGAGCAGGCA
TTGGTAAATCATTATGGAAAAAGCTTGTATAGCCAAGTTTTATTATTGGGGCATCACGGTAGTAACTCATCATCTTCGGG
TACGTTTCTGAATGTTGTTTCTCCTGTTTATGCAGTGGCTTCAAGTGGTTATGCCAATCCTTACCAACATCCTAGCAAGG
CTGTCCGCAATAGGATTAGGGCACATGACGCCCGTCTGTTGCGTACCGATTTATCGGGTGGTTTATGGTTTGAGCTGGAT
AATGAGGGTATCAGGCAAGGCCGTCTGAAGATTTGGAAACCTTATTGGCAGAAAAAGCCTTTTGAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(23-162)

Metallo-beta-lactamase superfamily (Lactamase_B)

(501-680)

Competence protein (Competence)

(207-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

57.895

99.865

0.578