Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   LVJ86_RS01905 Genome accession   NZ_CP091510
Coordinates   436292..439513 (+) Length   1073 a.a.
NCBI ID   WP_047759878.1    Uniprot ID   A0A0J0YUJ9
Organism   Neisseria arctica strain KH1503     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 431292..444513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ86_RS01880 (LVJ86_01880) rpsO 431615..431884 (-) 270 WP_047759883.1 30S ribosomal protein S15 -
  LVJ86_RS01885 (LVJ86_01885) truB 432079..432999 (-) 921 WP_047759882.1 tRNA pseudouridine(55) synthase TruB -
  LVJ86_RS01890 (LVJ86_01890) rbfA 433054..433425 (-) 372 WP_047759881.1 30S ribosome-binding factor RbfA -
  LVJ86_RS01895 (LVJ86_01895) - 433573..434622 (+) 1050 WP_047759880.1 Gfo/Idh/MocA family oxidoreductase -
  LVJ86_RS01900 (LVJ86_01900) - 434720..436117 (-) 1398 WP_047759879.1 PepSY domain-containing protein -
  LVJ86_RS01905 (LVJ86_01905) recC 436292..439513 (+) 3222 WP_047759878.1 exodeoxyribonuclease V subunit gamma Machinery gene
  LVJ86_RS01910 (LVJ86_01910) serC 439566..440672 (-) 1107 WP_047760044.1 phosphoserine transaminase -
  LVJ86_RS01915 (LVJ86_01915) rimP 441165..441596 (+) 432 WP_047759877.1 ribosome maturation factor RimP -
  LVJ86_RS01920 (LVJ86_01920) nusA 441626..443122 (+) 1497 WP_047759876.1 transcription termination factor NusA -

Sequence

Protein


Download         Length: 1073 a.a.        Molecular weight: 121875.18 Da        Isoelectric Point: 5.0991

>NTDB_id=651851 LVJ86_RS01905 WP_047759878.1 436292..439513(+) (recC) [Neisseria arctica strain KH1503]
MLYLYQSNRLETLADIFCVLHQQLPLSQALVPEEVVVQSQGMRRYLNQYLAGKTGIAANLRFSLPAGLSWRLMRELLPGI
PELSPFHPEVLRWRLFDLFQNSAFHEQSVCPAAYRALHGYLGSSDTAAYQLAGQLADIFDQYLVYRPQWIESWQSGGLYG
LGDDEIWQAELWRYLDNGGNHAPHRVALWQQLLGALDAEHLPERFFVFGIATMAPMYLQLLQALAEHCDVHIFALNPSSH
YWGNVIEAAQILKSEEDTDLSQSGHPLLASLGKQGRDFFDALTEAGVAQERSFYVDSESQAGMLQQLQQDIQNLVLPGSE
RSCLPDGTIRIRCAHSPLRELQILKEELLEVLAANPDWQPHDIAVLTPNIEPYSPYIEAVFGQAQGSAQALPYSVSDVRL
SRRQPLLYALEQILALFDSRFEVDKILPLLESNLILRRFNLTHEDLPLLHTIIAELNIRWGLDGNMRRNHGADDNLFTWQ
QGLDRLVLGWMLPEGDLSLWEGVSAWHSEPNQLAVLSQFSAFLNTLAKHYRLWQQAADTAQWCVRVRGLLGELFAPEGDD
QAAVQQIEQSLVRWQEEASLAQFEGALPLHTVIRHIGRFLDSESEAGFLRGGITFCSMVPMRSLPFKMICLLGLNDGDYP
RNTKAAGFDLISRYPQKGDRARRDDDRYLFLEAILSAREILYLSYIGRDIQNNEILAPSSLLSELIDTLAAMAGMRSSEY
GKKYIVQHPLQVFSRRYFNAESGYRSSRSDYAAALNQPVISRRSFFDGAFTKQQDTAETLITQSDFLSFWRNPVRAWLQG
QLGWREPYRDEAWEAAEPFEPNRSDIVYAEYTEARRTHADFGSVGHRLRAQSLLPPGELGRLWQQRFEIAAKSLDGTLCL
SRKLPPQAYTLMLARYTLEGSLGHCYQHGQIFFLDSQPYAPQKISLYLQHLIFCAVRPSESPCFESHILYPDHHAKLSAI
TQENACKQLEKWLDYFRIGQSRPLPFFAKTSFAVAERLLATDDREAAENEAFSQYLGSKMSKGQCDYTEVRLVFGHDDAL
PIETPLFWNLIEDLVVPLLEVLATDKTEDSGTV

Nucleotide


Download         Length: 3222 bp        

>NTDB_id=651851 LVJ86_RS01905 WP_047759878.1 436292..439513(+) (recC) [Neisseria arctica strain KH1503]
ATGCTTTATCTTTATCAATCAAACCGTCTTGAAACGCTGGCCGATATATTTTGTGTTTTGCATCAGCAACTGCCTTTGAG
CCAAGCCCTAGTGCCCGAGGAAGTCGTGGTGCAAAGTCAGGGTATGCGCCGTTATCTAAACCAATATCTAGCAGGGAAAA
CCGGTATAGCGGCCAATTTACGATTCAGCCTTCCTGCCGGATTAAGTTGGCGGCTGATGCGCGAATTACTTCCCGGTATT
CCCGAATTAAGTCCGTTTCATCCCGAAGTATTGCGTTGGCGGTTGTTTGATTTGTTTCAAAACAGCGCTTTTCACGAGCA
ATCGGTATGCCCCGCCGCTTATCGGGCATTGCACGGTTATTTAGGCAGCAGCGATACGGCGGCTTACCAATTGGCCGGGC
AGTTGGCCGATATTTTTGACCAATATCTGGTTTACCGTCCGCAATGGATAGAAAGTTGGCAGAGCGGCGGCTTGTATGGT
TTGGGTGATGATGAAATCTGGCAGGCGGAATTGTGGCGTTATCTGGATAATGGCGGCAACCACGCACCGCATCGGGTAGC
ATTGTGGCAGCAGCTGCTCGGTGCTTTGGATGCCGAACATTTGCCCGAGCGTTTTTTCGTATTCGGCATTGCTACCATGG
CGCCGATGTATTTGCAGCTTTTACAAGCTTTGGCCGAACATTGCGACGTACACATTTTCGCTCTAAACCCCAGCAGCCAT
TATTGGGGTAATGTTATCGAGGCTGCCCAAATCCTGAAAAGTGAAGAGGATACCGATCTTTCCCAAAGCGGTCATCCGCT
CTTGGCCTCATTGGGTAAGCAAGGGCGTGATTTCTTCGATGCCCTTACCGAGGCGGGAGTCGCGCAGGAGCGCAGTTTTT
ATGTTGATAGTGAAAGTCAAGCCGGAATGCTGCAGCAATTGCAGCAGGATATCCAAAATCTGGTTTTACCCGGCAGCGAG
AGGAGTTGTCTGCCCGACGGTACTATCCGTATCCGTTGCGCACACAGCCCTTTGCGGGAATTGCAGATTTTAAAGGAGGA
GTTGCTGGAGGTGTTGGCGGCAAACCCTGACTGGCAGCCTCATGATATTGCCGTGCTGACTCCTAATATCGAACCTTACA
GCCCTTATATAGAAGCTGTATTCGGGCAAGCGCAGGGTAGTGCGCAGGCATTGCCGTATTCGGTTTCGGATGTGCGTCTG
AGCCGCCGTCAGCCGCTTTTGTATGCGCTCGAACAGATTCTTGCCTTATTCGACAGCCGTTTTGAGGTTGATAAAATATT
GCCTTTACTGGAAAGCAATCTGATATTGCGCCGCTTCAATCTTACCCACGAAGATTTACCGCTGCTTCACACAATTATTG
CAGAACTGAATATCCGTTGGGGTTTAGATGGAAATATGCGGCGAAACCACGGCGCAGACGATAATTTATTTACTTGGCAG
CAAGGTTTGGACCGGCTGGTGTTGGGCTGGATGTTGCCCGAGGGAGACCTGTCTTTATGGGAGGGTGTCAGTGCCTGGCA
CAGTGAGCCGAACCAATTGGCCGTACTCAGCCAATTCAGTGCGTTTTTGAATACGCTTGCCAAGCATTACCGCCTATGGC
AGCAGGCAGCAGATACGGCACAATGGTGCGTCCGCGTGCGCGGTTTGTTGGGCGAATTGTTTGCGCCCGAAGGAGACGAT
CAGGCCGCCGTACAACAAATCGAACAGTCGTTGGTACGCTGGCAGGAAGAGGCTTCATTGGCACAGTTTGAAGGGGCATT
GCCGCTACACACCGTTATCCGCCATATCGGGCGCTTTCTCGACAGTGAAAGCGAAGCGGGATTTTTACGTGGCGGTATTA
CGTTTTGCAGCATGGTACCGATGCGCAGCCTGCCGTTTAAGATGATTTGTTTGCTAGGTTTGAACGACGGAGATTACCCG
CGCAATACTAAAGCAGCCGGTTTCGATTTGATTTCGCGTTATCCGCAAAAAGGCGACCGCGCCCGCCGTGACGATGACCG
CTACTTGTTTTTGGAGGCCATCTTAAGTGCGCGCGAAATCCTTTATTTGTCTTATATAGGGCGTGATATTCAAAATAATG
AAATACTTGCTCCTTCATCTTTGTTGAGTGAATTAATCGATACGCTGGCGGCGATGGCAGGTATGCGCAGCAGCGAATAC
GGTAAAAAATATATTGTGCAGCACCCGTTGCAGGTATTTTCCCGTCGCTATTTTAATGCGGAAAGCGGCTATAGAAGCAG
TCGGTCGGATTATGCGGCTGCGTTGAATCAGCCCGTAATCAGTAGACGTTCGTTTTTTGACGGTGCTTTTACCAAGCAAC
AAGATACGGCAGAAACTTTGATTACCCAGTCGGATTTTCTCAGCTTTTGGCGTAATCCCGTCCGTGCTTGGCTGCAAGGG
CAGTTGGGGTGGAGGGAGCCTTATCGTGATGAAGCATGGGAGGCAGCCGAACCGTTCGAACCGAACCGGTCTGATATCGT
TTATGCCGAATATACAGAGGCGCGCCGTACTCATGCGGATTTCGGCAGTGTCGGACACCGTTTGCGCGCACAAAGTTTGT
TGCCGCCGGGAGAGTTGGGGAGGCTTTGGCAGCAGCGTTTTGAAATTGCGGCGAAATCGTTAGACGGAACGCTTTGTTTG
AGCCGTAAGTTGCCGCCACAAGCTTATACTCTGATGCTTGCCAGATATACGCTTGAGGGTAGTTTGGGTCATTGTTACCA
ACACGGACAGATTTTCTTTCTTGATAGTCAGCCCTACGCACCGCAAAAAATCAGCCTGTATTTGCAACATTTGATTTTTT
GTGCGGTCAGGCCGTCTGAAAGCCCTTGTTTCGAAAGTCATATTTTGTATCCCGATCATCATGCCAAGTTGTCGGCAATC
ACTCAAGAAAATGCTTGTAAGCAGCTTGAAAAGTGGTTGGATTATTTCAGAATCGGGCAGAGCAGGCCGCTTCCGTTTTT
TGCGAAAACCAGTTTTGCCGTAGCGGAAAGGTTATTGGCTACCGATGATAGGGAAGCTGCTGAAAATGAAGCGTTTTCAC
AGTATTTGGGCAGCAAAATGAGCAAGGGGCAATGCGACTATACCGAAGTACGGTTGGTATTCGGACACGATGATGCATTA
CCTATTGAAACGCCGTTGTTCTGGAACTTGATTGAGGATTTGGTGGTTCCTTTGCTGGAAGTTTTGGCTACTGATAAAAC
AGAAGATAGTGGTACCGTATAA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(781-997)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0YUJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

59.184

100

0.595