Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   LVJ88_RS09675 Genome accession   NZ_CP091509
Coordinates   2068408..2072031 (+) Length   1207 a.a.
NCBI ID   WP_244694196.1    Uniprot ID   -
Organism   Neisseria dumasiana strain LMG 30012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2063408..2077031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ88_RS09660 (LVJ88_09660) - 2064489..2065388 (-) 900 WP_085418870.1 Dyp-type peroxidase -
  LVJ88_RS09665 (LVJ88_09665) - 2065599..2066687 (+) 1089 WP_085418869.1 metallophosphoesterase -
  LVJ88_RS09670 (LVJ88_09670) - 2066764..2068083 (-) 1320 WP_085418868.1 MFS transporter -
  LVJ88_RS09675 (LVJ88_09675) recB 2068408..2072031 (+) 3624 WP_244694196.1 exodeoxyribonuclease V subunit beta Machinery gene
  LVJ88_RS09680 (LVJ88_09680) rpsU 2072329..2072541 (+) 213 WP_054600191.1 30S ribosomal protein S21 -
  LVJ88_RS09685 (LVJ88_09685) - 2072840..2073286 (+) 447 WP_085356931.1 GatB/YqeY domain-containing protein -
  LVJ88_RS09690 (LVJ88_09690) dnaG 2073355..2075130 (+) 1776 WP_054600189.1 DNA primase -

Sequence

Protein


Download         Length: 1207 a.a.        Molecular weight: 135147.27 Da        Isoelectric Point: 5.7319

>NTDB_id=651834 LVJ88_RS09675 WP_244694196.1 2068408..2072031(+) (recB) [Neisseria dumasiana strain LMG 30012]
MPAQPFNPLTIPISGTSLIEASAGTGKTYGIAALFTRLIVLEKMPVESVLVVTFTKAATAELKTRLRARLDDVLSVLENV
PDAAHHSDGLAAYCAQHHEGDVFLPNLLEAALQQESQERLIVRLKAAISRFDNAAIYTIHGFCQRLLRDYAFFCQAPFDV
ELTEDTRERLLVPAQDFWRENVSHNPVLAKLMFEHRHTPETMLSEIKSFIGRPYLAFRRPESNIETAQKTLAQCWENIRT
QLPELVQTFWTIHPVLNGNKYRKNTFQNVFALLEAAAESNTLPSNHDKLPLFAADALEAATKKTATPDTAAFARLNILAR
LGECFNGLAEAEQNTLIQLQLDMLQYIGNALEAEKKSRRERSFDDLLLDVYHALIRSPHREQLAQTVAAVWKAALIDEFQ
DTDPLQYEIFKQLFIRQGNPLFLVGDPKQAIYSFRGADIYAYMQAAEDADARYTLTTNFRSHAKLINGIGALFKQKNRPF
VLDSIDYADVNAARSESRLNPPKTAVSIRWLNHETDGGGNKDALRSRAADNCADEIAAVLNDAAAGRLNYQKNTAGPAVP
LQSGQIAVLVRTHNEGQMIAKALKQRNIQSVLLQRESVFASEEAEAVDALIGFWLQPQRTETLRFVLGGILFRYTAAMIH
ELNRNETALLSWINSAQTAAEVWQQHGIYAAIQQFAAEHGIEARLLARGSTRSLTNYHQLIERLAEEDEQSRSPAALREW
LKNQIQTAQNAEHPKGENNLLRLESDENLVKIVTMHAAKGLQYPLVYCPFVWDAKKNTPQGWQILHRPRRPTKLLHETQL
DDADRNQLADENLSENLRLLYVALTRAEEHLVIYAARCSNTPDNTFAYLLEGTADSRRADIAAAYAAAKSEADTMLKNNW
QRFIDNAPENTDFSFTETPPEPAEYQAPSFSDGFYQAAGVSARPFEFIRHTSFTGLSRHTRNTDEHTREELQPAIDTAET
ATDVPLSAMPSEHTDTRSIHTFPRGASAGVCLHEILETFDFGSPAAAQNETVAATLEHYGFDAGWLPAVTAMLDHTRLSP
LDGQTALADIPATQRLAEMGFTLFMHDFTLNRLQQWFAETEHGLPAECATAAKLLDFNDVNGFLNGFIDMVCRDSDGLVT
VIDYKSNHLGYAAEDYTQAAMNEAVAHHHYYLQALIYAIATARHFASRQQPLHTVAVRYLFLRGLNGSGNNGIWSWNIDT
ALLQEWL

Nucleotide


Download         Length: 3624 bp        

>NTDB_id=651834 LVJ88_RS09675 WP_244694196.1 2068408..2072031(+) (recB) [Neisseria dumasiana strain LMG 30012]
ATGCCAGCACAACCGTTTAACCCGCTCACCATTCCCATTTCGGGCACGTCCCTTATCGAAGCCTCTGCCGGCACAGGCAA
AACCTACGGCATTGCTGCTTTGTTTACCCGTTTGATCGTGCTGGAAAAAATGCCCGTAGAAAGCGTGTTGGTCGTTACCT
TTACCAAAGCTGCCACCGCCGAACTGAAAACCCGCCTGCGGGCGCGTTTGGACGATGTGTTATCGGTATTGGAAAACGTG
CCGGATGCCGCACACCATTCAGACGGCCTCGCCGCGTATTGCGCGCAACACCACGAAGGCGACGTATTTTTACCCAACCT
GCTCGAAGCCGCCTTGCAGCAAGAAAGCCAAGAGCGCCTGATTGTGCGCCTCAAAGCAGCCATCAGCCGCTTCGACAATG
CCGCCATTTATACCATTCACGGCTTCTGCCAACGCCTGCTGCGCGATTATGCCTTTTTCTGCCAAGCCCCTTTCGACGTA
GAACTAACCGAAGACACGCGCGAACGCCTGCTGGTGCCAGCCCAAGACTTCTGGCGCGAAAACGTGTCGCACAATCCTGT
ATTGGCCAAACTCATGTTCGAGCACCGCCACACGCCCGAAACCATGCTTTCCGAAATCAAAAGCTTTATCGGCCGCCCCT
ATCTGGCTTTCAGACGGCCTGAAAGCAATATCGAAACCGCACAAAAGACATTGGCGCAATGCTGGGAAAATATCCGCACC
CAACTGCCCGAATTGGTGCAAACCTTTTGGACAATCCACCCCGTTTTAAACGGCAACAAATACCGCAAAAATACCTTCCA
AAACGTTTTTGCCTTACTGGAAGCCGCAGCAGAAAGCAACACTCTGCCTTCCAACCACGACAAACTCCCCCTGTTTGCCG
CCGACGCTCTTGAAGCCGCCACCAAAAAAACCGCCACGCCCGACACCGCCGCCTTTGCCCGCTTAAACATACTCGCACGG
CTGGGCGAATGCTTCAACGGTTTGGCCGAAGCCGAACAAAACACCCTGATACAGCTGCAACTCGACATGCTGCAATACAT
CGGCAATGCGTTGGAGGCTGAAAAAAAATCCCGCCGCGAACGCAGTTTCGACGACCTGCTGCTCGATGTTTACCATGCCC
TTATCCGCAGCCCGCACCGCGAACAATTGGCACAAACCGTTGCAGCCGTTTGGAAAGCCGCCCTGATCGACGAATTCCAA
GACACCGACCCCCTGCAATACGAAATATTCAAACAACTGTTTATCCGTCAGGGCAACCCGCTGTTTTTGGTCGGCGATCC
CAAACAGGCGATTTACAGCTTTCGCGGAGCCGACATCTACGCCTACATGCAGGCCGCCGAAGATGCCGACGCCCGCTACA
CCTTGACCACCAACTTCCGCAGCCACGCCAAACTGATCAACGGCATCGGCGCCTTGTTCAAACAGAAAAACCGCCCCTTC
GTGCTCGACAGCATCGACTATGCCGACGTAAACGCCGCCCGCAGCGAAAGCCGTCTGAATCCGCCCAAAACCGCCGTTTC
CATACGCTGGCTCAACCACGAAACCGACGGCGGCGGCAACAAAGACGCGCTGCGCAGCCGTGCGGCGGATAACTGTGCCG
ACGAAATCGCCGCCGTTCTCAACGATGCCGCGGCAGGCCGTCTGAATTATCAGAAAAACACCGCCGGCCCCGCCGTGCCG
CTGCAATCGGGGCAGATTGCCGTACTCGTGCGCACCCACAACGAAGGGCAGATGATTGCCAAAGCCCTGAAACAGCGCAA
CATCCAAAGCGTGCTGCTGCAACGCGAATCGGTGTTTGCATCAGAAGAAGCCGAGGCCGTTGACGCTCTGATCGGCTTCT
GGCTGCAACCGCAACGCACCGAAACATTGCGCTTCGTGCTCGGCGGCATATTGTTCCGCTACACCGCCGCCATGATCCAC
GAACTCAACCGCAACGAAACCGCCCTGCTCTCGTGGATCAACTCCGCCCAAACCGCCGCCGAAGTATGGCAGCAACACGG
CATCTACGCCGCCATCCAGCAGTTTGCCGCCGAACACGGCATCGAAGCCCGCCTGCTCGCGCGCGGCAGCACCCGCAGCC
TCACCAACTACCACCAACTGATCGAACGCTTGGCCGAAGAAGACGAACAAAGCCGCTCCCCCGCCGCACTCCGGGAATGG
CTCAAAAACCAGATTCAGACGGCCCAAAACGCCGAACATCCCAAAGGCGAAAACAATCTGCTGCGGCTCGAAAGCGACGA
AAACCTCGTCAAAATCGTGACCATGCACGCCGCCAAAGGCTTGCAGTATCCGCTGGTATATTGCCCCTTCGTGTGGGATG
CGAAAAAGAACACCCCGCAAGGCTGGCAGATTCTGCACCGCCCCCGCCGTCCCACCAAACTGCTGCACGAAACACAGCTC
GACGACGCCGACCGCAACCAGCTTGCCGACGAAAACCTAAGCGAAAACCTGCGCCTGCTGTACGTTGCCCTCACCCGCGC
CGAAGAACATCTGGTTATCTACGCCGCCCGTTGCAGCAACACGCCCGACAACACCTTCGCCTACCTGCTCGAAGGCACCG
CCGACAGCCGCCGCGCCGACATCGCCGCCGCATACGCCGCGGCAAAAAGCGAAGCAGACACCATGCTGAAAAACAACTGG
CAGCGGTTCATCGACAACGCTCCCGAAAATACCGACTTCAGCTTTACCGAAACACCTCCCGAACCGGCGGAATATCAAGC
CCCCTCCTTTTCAGACGGCTTCTACCAAGCAGCCGGCGTTTCTGCACGCCCGTTCGAGTTCATACGCCATACCAGCTTTA
CCGGCTTGAGCCGCCACACCCGCAACACCGACGAACATACCCGCGAAGAACTGCAACCGGCCATCGACACAGCGGAAACC
GCAACCGACGTACCTTTATCCGCCATGCCGTCTGAACACACCGATACCCGCAGCATCCACACCTTCCCGCGCGGCGCAAG
CGCAGGCGTGTGCCTGCACGAAATACTCGAAACCTTCGATTTCGGCTCCCCCGCCGCCGCACAAAACGAAACCGTTGCCG
CCACACTGGAACACTACGGTTTCGATGCCGGCTGGCTGCCCGCCGTTACCGCCATGCTCGACCACACCCGCCTCTCCCCG
CTCGACGGCCAAACCGCGCTGGCCGACATTCCCGCCACCCAACGCCTTGCCGAAATGGGCTTTACCCTGTTTATGCACGA
CTTCACTCTCAACCGTTTGCAGCAATGGTTCGCCGAAACAGAACACGGGCTGCCCGCCGAATGCGCCACCGCCGCCAAAC
TGCTCGACTTCAACGACGTTAACGGTTTTTTAAACGGCTTCATCGATATGGTCTGCCGCGATTCAGACGGCCTCGTTACC
GTAATCGACTATAAATCCAACCACTTGGGCTATGCCGCCGAAGACTACACTCAAGCAGCCATGAACGAAGCCGTCGCCCA
CCACCACTATTACCTGCAAGCCCTGATTTACGCCATTGCCACCGCCCGCCACTTCGCTTCACGCCAACAGCCCCTGCACA
CCGTTGCCGTGCGCTATCTCTTCCTGCGCGGTTTAAACGGCAGCGGCAACAACGGCATCTGGTCGTGGAACATCGACACA
GCCCTATTGCAGGAATGGCTGTAA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1069-1184)

UvrD-like helicase C-terminal domain (UvrD_C)

(453-835)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(8-449)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

59.342

100

0.597